View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5581_low_12 (Length: 246)

Name: NF5581_low_12
Description: NF5581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5581_low_12
NF5581_low_12
[»] chr4 (15 HSPs)
chr4 (7-246)||(45195664-45195903)
chr4 (44-177)||(41945190-41945322)
chr4 (38-175)||(7257548-7257687)
chr4 (32-158)||(24083154-24083281)
chr4 (81-185)||(9689427-9689531)
chr4 (54-208)||(26988891-26989046)
chr4 (76-156)||(39791234-39791314)
chr4 (83-208)||(15034761-15034886)
chr4 (87-171)||(33086901-33086985)
chr4 (102-153)||(3322264-3322315)
chr4 (120-174)||(24234008-24234062)
chr4 (76-138)||(45522381-45522443)
chr4 (76-163)||(3664223-3664310)
chr4 (83-140)||(41858191-41858248)
chr4 (39-103)||(28320056-28320120)
[»] chr7 (10 HSPs)
chr7 (52-169)||(35356356-35356472)
chr7 (53-183)||(35424853-35424983)
chr7 (87-162)||(4451864-4451939)
chr7 (39-171)||(22713403-22713535)
chr7 (111-178)||(3255103-3255170)
chr7 (40-169)||(10381983-10382110)
chr7 (41-154)||(5876732-5876847)
chr7 (56-138)||(16377903-16377985)
chr7 (39-99)||(2391580-2391640)
chr7 (54-114)||(44453609-44453669)
[»] chr8 (12 HSPs)
chr8 (54-161)||(37507548-37507655)
chr8 (76-199)||(37325116-37325239)
chr8 (55-170)||(13818755-13818870)
chr8 (95-170)||(4656561-4656637)
chr8 (52-127)||(40506623-40506699)
chr8 (39-149)||(31078788-31078898)
chr8 (54-127)||(8757209-8757282)
chr8 (95-169)||(39555910-39555983)
chr8 (40-69)||(29026271-29026300)
chr8 (29-156)||(7632640-7632768)
chr8 (45-137)||(26462337-26462429)
chr8 (39-182)||(27157645-27157788)
[»] chr1 (10 HSPs)
chr1 (36-185)||(32556465-32556614)
chr1 (56-172)||(2749166-2749282)
chr1 (83-126)||(48400953-48400996)
chr1 (83-161)||(50549222-50549298)
chr1 (54-174)||(51473989-51474108)
chr1 (44-114)||(23404878-23404948)
chr1 (73-139)||(23453328-23453393)
chr1 (37-113)||(10308233-10308309)
chr1 (39-157)||(17339721-17339839)
chr1 (83-168)||(15322251-15322336)
[»] chr3 (14 HSPs)
chr3 (60-184)||(44053379-44053503)
chr3 (37-168)||(43726562-43726693)
chr3 (41-156)||(15462021-15462136)
chr3 (32-174)||(26665455-26665598)
chr3 (59-138)||(51715027-51715106)
chr3 (81-169)||(22318224-22318312)
chr3 (103-174)||(42110945-42111017)
chr3 (56-162)||(1750080-1750187)
chr3 (87-169)||(20704973-20705056)
chr3 (101-178)||(39745522-39745597)
chr3 (62-127)||(21313435-21313500)
chr3 (55-199)||(30670797-30670942)
chr3 (95-155)||(33995665-33995725)
chr3 (40-123)||(18395498-18395581)
[»] chr2 (13 HSPs)
chr2 (54-169)||(43050124-43050239)
chr2 (56-156)||(37536083-37536183)
chr2 (61-163)||(22417257-22417354)
chr2 (39-157)||(35453191-35453309)
chr2 (39-199)||(34190767-34190927)
chr2 (45-169)||(24510897-24511021)
chr2 (39-137)||(37267708-37267806)
chr2 (58-127)||(19572582-19572651)
chr2 (82-158)||(13029246-13029322)
chr2 (87-155)||(23046586-23046654)
chr2 (54-157)||(22442690-22442793)
chr2 (42-114)||(24166791-24166863)
chr2 (39-138)||(34810282-34810382)
[»] chr6 (14 HSPs)
chr6 (76-161)||(30525814-30525900)
chr6 (52-174)||(9929304-9929426)
chr6 (37-163)||(33240846-33240971)
chr6 (54-150)||(2513100-2513196)
chr6 (56-126)||(10242556-10242626)
chr6 (54-165)||(18075512-18075623)
chr6 (51-148)||(33450812-33450910)
chr6 (83-170)||(2119217-2119305)
chr6 (45-172)||(29263793-29263921)
chr6 (62-163)||(29389152-29389254)
chr6 (60-169)||(21974767-21974876)
chr6 (119-172)||(14713897-14713950)
chr6 (39-123)||(32826713-32826798)
chr6 (83-183)||(34949017-34949117)
[»] chr5 (18 HSPs)
chr5 (56-163)||(27707179-27707287)
chr5 (56-163)||(23994346-23994453)
chr5 (52-169)||(28503229-28503345)
chr5 (76-164)||(40491708-40491797)
chr5 (54-140)||(8217116-8217202)
chr5 (52-127)||(36183333-36183408)
chr5 (57-169)||(17223081-17223194)
chr5 (45-114)||(33043868-33043937)
chr5 (83-157)||(32075876-32075949)
chr5 (52-114)||(32177307-32177369)
chr5 (78-178)||(19972327-19972428)
chr5 (83-158)||(7599443-7599519)
chr5 (96-155)||(13169717-13169776)
chr5 (95-169)||(22017661-22017736)
chr5 (39-114)||(27549737-27549812)
chr5 (37-114)||(35631225-35631302)
chr5 (39-124)||(37928048-37928133)
chr5 (96-156)||(333441-333501)
[»] scaffold0071 (1 HSPs)
scaffold0071 (41-156)||(56-171)
[»] scaffold0110 (1 HSPs)
scaffold0110 (54-168)||(6417-6532)
[»] scaffold0239 (1 HSPs)
scaffold0239 (120-188)||(16579-16647)


Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 7 - 246
Target Start/End: Complemental strand, 45195903 - 45195664
Alignment:
Q  7 aaaggtcaaaccaagacactggtatataatgtcattattttttctatcctatgagtttctcgcacgccttatttgaattctaaaattcgaaatgttttaa 106  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45195903 aaaggtcaaaccaaggcactagtatataatgtcattattttttctatcctatgagtttctcgcacgccttatttgaattctaaaattcgaaatgttttaa 45195804  T
Q  107 cgtgttttggaggtttttatgagatgtttatgtcgttcggattatataatccaaactacatagagcgcacgataaatcaacaagatggaaaaataaggag 206  Q
    ||| |||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||| |||||  |||||||||||||||||||||||||||||||    
T  45195803 cgtattttggagatttttataagatgtttatgtcgttcgaattatataatccaaactacatcgagcgtgcgataaatcaacaagatggaaaaataaggag 45195704  T
Q  207 tcaatatataatggattctcaaggcctatatcgacgcaac 246  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  45195703 tcaatatataatggattctcaaggcctatatcgacgcaac 45195664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 44 - 177
Target Start/End: Complemental strand, 41945322 - 41945190
Alignment:
Q  44 ttttttctatcctatgagtttctcgcacgccttatttgaattctaaaattcgaaatgttttaacgtgttttggaggtttttatgagatgtttatgtcgtt 143  Q
    ||||||| | ||||||| ||||| || |||| |||||||||||||||||  ||||||||||||| ||||||| ||||||||||| | |||||||||||||    
T  41945322 ttttttccaccctatgactttcttgcgcgccctatttgaattctaaaatctgaaatgttttaacatgttttgaaggtttttatg-ggtgtttatgtcgtt 41945224  T
Q  144 cggattatataatccaaactacatagagcgcacg 177  Q
    ||||||||||||||| |||| ||||  |||||||    
T  41945223 cggattatataatccgaactgcataacgcgcacg 41945190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 38 - 175
Target Start/End: Complemental strand, 7257687 - 7257548
Alignment:
Q  38 tcattattttttctatcctatgagtttctcgc--acgccttatttgaattctaaaattcgaaatgttttaacgtgttttggaggtttttatgagatgttt 135  Q
    |||||||||||||||||||||||||||||| |  ||| |  ||||  |||||||||| ||||||||||  ||||||||||||||||||  || |    ||    
T  7257687 tcattattttttctatcctatgagtttctctctcacgtccaatttagattctaaaatccgaaatgtttcgacgtgttttggaggttttattgggggtatt 7257588  T
Q  136 atgtcgttcggattatataatccaaactacatagagcgca 175  Q
    |||||||| ||||| |||||||| ||||||||||||||||    
T  7257587 atgtcgtttggattctataatccgaactacatagagcgca 7257548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 32 - 158
Target Start/End: Original strand, 24083154 - 24083281
Alignment:
Q  32 ataatgtcattattttttctatcctatgagtttctcgcacgccttatttgaattctaaaattcgaaatgttttaacgtgt-tttggaggtttttatgaga 130  Q
    |||||||||||| |||| ||||||| ||||||||||||  ||| |||||| |||||||||| |||||| ||||||||||| ||  ||| |||||||| |     
T  24083154 ataatgtcattacttttcctatcctgtgagtttctcgcgtgccctatttggattctaaaatccgaaatattttaacgtgtgttaagagatttttatgggg 24083253  T
Q  131 tgtttatgtcgttcggattatataatcc 158  Q
    ||||||||  ||| ||||||||||||||    
T  24083254 tgtttatgcagtttggattatataatcc 24083281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 81 - 185
Target Start/End: Complemental strand, 9689531 - 9689427
Alignment:
Q  81 gaattctaaaattcgaaatgttttaacgtgttttggaggtttttatgagatgtttatgtcgttcggattatataatccaaactacatagagcgcacgata 180  Q
    ||||| ||||||  ||||| ||||||| |||||| ||| || ||||||| |||||||  |||||||||||||||||| |||||||||||||||| ||| |    
T  9689531 gaattttaaaatctgaaatattttaacttgttttagagattcttatgaggtgtttataccgttcggattatataatctaaactacatagagcgcgcgaga 9689432  T
Q  181 aatca 185  Q
    |||||    
T  9689431 aatca 9689427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 54 - 208
Target Start/End: Complemental strand, 26989046 - 26988891
Alignment:
Q  54 cctatgagtttctcgcacgccttatttgaattctaaaattcgaaatgttttaacgtgttttggaggtttttatgagatgtttatg-tcgttcggattata 152  Q
    ||||||||||||| ||  ||| ||| |  |||||||||| |||||||||||||||||||||| ||||||||||| | ||| ||||  |||||||||| ||    
T  26989046 cctatgagtttcttgcgtgccctatctagattctaaaatccgaaatgttttaacgtgttttgaaggtttttatggggtgtatatgcccgttcggattcta 26988947  T
Q  153 taatccaaactacatagagcgcacgataaatcaacaagatggaaaaataaggagtc 208  Q
    || |||||||| || || |||| ||| ||||||| | | ||| |||| ||||||||    
T  26988946 tagtccaaactgcacagggcgcgcgagaaatcaatagggtgggaaaagaaggagtc 26988891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 76 - 156
Target Start/End: Original strand, 39791234 - 39791314
Alignment:
Q  76 tatttgaattctaaaattcgaaatgttttaacgtgttttggaggtttttatgagatgtttatgtcgttcggattatataat 156  Q
    ||||||||||||||||| |||||| ||| ||||||||||| || |||||||| | |||||||| |||||||||| ||||||    
T  39791234 tatttgaattctaaaatccgaaatatttcaacgtgttttgaagatttttatggggtgtttatgccgttcggattctataat 39791314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 83 - 208
Target Start/End: Complemental strand, 15034886 - 15034761
Alignment:
Q  83 attctaaaattcgaaatgttttaacgtgttttggaggtttttatgagatgtttatgtcgttcggattatataatccaaactacatagagcgcacgataaa 182  Q
    |||||||||| |  ||||||||||| ||||| ||||||||  ||| |||||| ||| | || ||||||||||||||||| ||||||||| |  | | |||    
T  15034886 attctaaaatcctgaatgttttaacatgtttgggaggtttagatgggatgttcatgccatttggattatataatccaaattacatagagtgtgcaagaaa 15034787  T
Q  183 tcaacaagatggaaaaataaggagtc 208  Q
    |||| ||||||| |||| ||||||||    
T  15034786 tcaataagatgggaaaacaaggagtc 15034761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 171
Target Start/End: Original strand, 33086901 - 33086985
Alignment:
Q  87 taaaattcgaaatgttttaacgtgttttggaggtttttatgagatgtttatgtcgttcggattatataatccaaactacatagag 171  Q
    |||||||||||||||||||||||||||| |||  ||||||| | ||||| |||| |||| |||||||||||| ||| | ||||||    
T  33086901 taaaattcgaaatgttttaacgtgttttagagccttttatggggtgtttttgtcattcgaattatataatccgaacaaaatagag 33086985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 102 - 153
Target Start/End: Complemental strand, 3322315 - 3322264
Alignment:
Q  102 tttaacgtgttttggaggtttttatgagatgtttatgtcgttcggattatat 153  Q
    |||||||||||||||||||||||||||||||||||| ||||||  |||||||    
T  3322315 tttaacgtgttttggaggtttttatgagatgtttatatcgttcaaattatat 3322264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 120 - 174
Target Start/End: Complemental strand, 24234062 - 24234008
Alignment:
Q  120 tttttatgagatgtttatgtcgttcggattatataatccaaactacatagagcgc 174  Q
    |||||||||| | |||||||||||||||||||||||||  |||| ||||||||||    
T  24234062 tttttatgaggtatttatgtcgttcggattatataatctgaactgcatagagcgc 24234008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 76 - 138
Target Start/End: Complemental strand, 45522443 - 45522381
Alignment:
Q  76 tatttgaattctaaaattcgaaatgttttaacgtgttttggaggtttttatgagatgtttatg 138  Q
    ||||||||||||||| || ||| |  |||||| |||||| |||||||||||||||||||||||    
T  45522443 tatttgaattctaaattttgaagtactttaacatgttttagaggtttttatgagatgtttatg 45522381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 163
Target Start/End: Original strand, 3664223 - 3664310
Alignment:
Q  76 tatttgaattctaaaattcgaaatgttttaacgtgttttggaggtttttatgagatgtttatgtcgttcggattatataatccaaact 163  Q
    ||||| ||||||||||| |||||| |||||||||||||| |  | ||||||||||| ||||||  ||||  ||| || ||||||||||    
T  3664223 tatttaaattctaaaatccgaaatattttaacgtgtttttgtaggttttatgagatttttatgcagttcctattttagaatccaaact 3664310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 140
Target Start/End: Complemental strand, 41858248 - 41858191
Alignment:
Q  83 attctaaaattcgaaatgttttaacgtgttttggaggtttttatgagatgtttatgtc 140  Q
    ||||||||||||||||| ||| |||||||||| |||| ||||||| | | ||||||||    
T  41858248 attctaaaattcgaaatctttcaacgtgttttagaggattttatggggtatttatgtc 41858191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 103
Target Start/End: Complemental strand, 28320120 - 28320056
Alignment:
Q  39 cattattttttctatcctatgagtttctcgcacgccttatttgaattctaaaattcgaaatgttt 103  Q
    ||||||||||   ||||||| ||||||| |||||||||||||  |||  ||||||||||||||||    
T  28320120 cattatttttctcatcctataagtttcttgcacgccttatttagatttcaaaattcgaaatgttt 28320056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 52 - 169
Target Start/End: Complemental strand, 35356472 - 35356356
Alignment:
Q  52 atcctatgagtttctcgcacgccttatttgaattctaaaattcgaaatgttttaacgtgttttggaggtttttatgagatgtttatgtcgttcggattat 151  Q
    ||||| |||||||||||  || | ||||||||||||||||| |||||||||||||||||||||||||||||||||| | | |||| ||||||||||||||    
T  35356472 atcctttgagtttctcgtgcgtcctatttgaattctaaaatccgaaatgttttaacgtgttttggaggtttttatggggt-tttacgtcgttcggattat 35356374  T
Q  152 ataatccaaactacatag 169  Q
    ||||||| |||| |||||    
T  35356373 ataatccgaactgcatag 35356356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 53 - 183
Target Start/End: Complemental strand, 35424983 - 35424853
Alignment:
Q  53 tcctatgagtttctcgcacgccttatttgaattctaaaattcgaaatgttttaacgtgttttggaggtttttatgagatgtttatgtcgttcggattata 152  Q
    ||||||||||||||||  |||| || | ||||||||||||  ||||| ||||||| | ||||||||||||||||| |||||||||| ||||| |||| ||    
T  35424983 tcctatgagtttctcgtgcgccctaatcgaattctaaaatctgaaatattttaacatattttggaggtttttatgcgatgtttatgccgttcagattcta 35424884  T
Q  153 taatccaaactacatagagcgcacgataaat 183  Q
    |||||||||||||||||  ||||||| ||||    
T  35424883 taatccaaactacataggacgcacgagaaat 35424853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 87 - 162
Target Start/End: Original strand, 4451864 - 4451939
Alignment:
Q  87 taaaattcgaaatgttttaacgtgttttggaggtttttatgagatgtttatgtcgttcggattatataatccaaac 162  Q
    ||||||| ||||||||||||| |||||| || ||||||||| | | |||||||||||| ||||||||||| |||||    
T  4451864 taaaatttgaaatgttttaacatgtttttgaagtttttatgggttatttatgtcgttcagattatataattcaaac 4451939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 171
Target Start/End: Complemental strand, 22713535 - 22713403
Alignment:
Q  39 cattattttttctatcctatgagtttctcgcacgccttatttgaattctaaaattcgaaatgttttaacgtgtttt-ggaggtttttatgagatgtttat 137  Q
    ||||| |||||| | | |||||||||||||  ||||| ||||||||| ||||||  ||||| ||| |||||||||| |||||||||||   | |||||||    
T  22713535 cattactttttccaccttatgagtttctcgtgcgcct-atttgaattttaaaatctgaaatatttcaacgtgtttttggaggtttttacagggtgtttat 22713437  T
Q  138 gtcgttcggattatataatccaaactacatagag 171  Q
    | | |||||||| ||||||| |||||| ||||||    
T  22713436 gccattcggattttataatctaaactatatagag 22713403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 178
Target Start/End: Complemental strand, 3255170 - 3255103
Alignment:
Q  111 ttttggaggtttttatgagatgtttatgtcgttcggattatataatccaaactacatagagcgcacga 178  Q
    ||||| ||||||||||| | |||||||| ||||| ||||||||||||| |||| |||||||| |||||    
T  3255170 ttttgaaggtttttatggggtgtttatgccgttctgattatataatccgaactgcatagagcacacga 3255103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 169
Target Start/End: Complemental strand, 10382110 - 10381983
Alignment:
Q  40 attattttttctatcctatgagtttctcgcacgccttatttgaattctaaaattcgaaatgttttaacgtgttttggaggtttttatgagatgtttatgt 139  Q
    ||||||||||| ||| ||||| ||||||||||| ||||||   ||| |||||| |||||  |||||||||||||| || | ||||||| | | |||||||    
T  10382110 attattttttccatcgtatgactttctcgcacgtcttattaagattttaaaatccgaaa-attttaacgtgtttttgaaggttttatggggtttttatgt 10382012  T
Q  140 cgttcggattatataatccaaactacatag 169  Q
     | ||||||| || |||||||||| |||||    
T  10382011 -ggtcggattctaaaatccaaactgcatag 10381983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 154
Target Start/End: Original strand, 5876732 - 5876847
Alignment:
Q  41 ttattttttctatcctatgagtttctcgcacg-ccttatttgaattctaaaattcgaaatgttttaa-cgtgttttggaggtttttatgagatgtttatg 138  Q
    ||||||||| ||||||||||||||||| | |  || | || | ||||||||||   ||||||||||| |||| |||  || |||||||  ||||||||||    
T  5876732 ttattttttttatcctatgagtttctcacgcaaccatgttcggattctaaaatctaaaatgttttaaacgtgctttcaagatttttataggatgtttatg 5876831  T
Q  139 tcgttcggattatata 154  Q
    ||||||||||||||||    
T  5876832 tcgttcggattatata 5876847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 138
Target Start/End: Complemental strand, 16377985 - 16377903
Alignment:
Q  56 tatgagtttctcgcacgccttatttgaattctaaaattcgaaatgttttaacgtgttttggaggtttttatgagatgtttatg 138  Q
    ||||| |||||||| || |||||||  ||| ||||||   |||| |||| ||||||||| |||||||||||||| ||||||||    
T  16377985 tatgattttctcgctcgtcttatttagattttaaaatataaaatatttttacgtgtttttgaggtttttatgaggtgtttatg 16377903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 2391580 - 2391640
Alignment:
Q  39 cattattttttctatcctatgagtttctcgcacgccttatttgaattctaaaattcgaaat 99  Q
    ||||| |||||  |||||||||||||||||| |||  |||||| |||||||||| ||||||    
T  2391580 cattacttttttcatcctatgagtttctcgcgcgcactatttggattctaaaatccgaaat 2391640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 114
Target Start/End: Original strand, 44453609 - 44453669
Alignment:
Q  54 cctatgagtttctcgcacgccttatttgaattctaaaattcgaaatgttttaacgtgtttt 114  Q
    ||||| ||||||||| ||| | |||| | ||||||||||||||||| ||| ||||||||||    
T  44453609 cctataagtttctcgtacgtcctattcggattctaaaattcgaaatatttcaacgtgtttt 44453669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 54 - 161
Target Start/End: Original strand, 37507548 - 37507655
Alignment:
Q  54 cctatgagtttctcgcacgccttatttgaattctaaaattcgaaatgttttaacgtgttttggaggtttttatgagatgtttatgtcgttcggattatat 153  Q
    ||||||||||||| || |||| |||| |||||||||||| |||||||||| ||||||||||||||||||||||| | | |||||||||||| |||| |||    
T  37507548 cctatgagtttcttgcgcgccctattcgaattctaaaatccgaaatgtttcaacgtgttttggaggtttttatggggtatttatgtcgttcagattctat 37507647  T
Q  154 aatccaaa 161  Q
    || |||||    
T  37507648 aaaccaaa 37507655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 76 - 199
Target Start/End: Original strand, 37325116 - 37325239
Alignment:
Q  76 tatttgaattctaaaattcgaaatgttttaacgtgttttggaggtttttatgagatgtttatgtcgttcggattatataatccaaactacatagagcgca 175  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||| || | ||| ||||||| ||| | |||||  |||     
T  37325116 tatttaaattttaaaattcgaaatgttttaacgtgttttggaggttttaatgggatgtttatgtcatttgaattctataatctaaattgcataggacgcg 37325215  T
Q  176 cgataaatcaacaagatggaaaaa 199  Q
     || ||||||| ||||||||||||    
T  37325216 tgagaaatcaataagatggaaaaa 37325239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 55 - 170
Target Start/End: Original strand, 13818755 - 13818870
Alignment:
Q  55 ctatgagtttctcgcacgccttatttgaattctaaaattcgaaatgttttaacgtgttttggaggtttttatgagatgtttatgtcgttcggattatata 154  Q
    |||||||||||| |||||   |||||| ||| |||||||| |||| ||| |||||||||||| ||||| |||| | ||||||||  ||| ||||| ||||    
T  13818755 ctatgagtttcttgcacgatctatttggattttaaaattcaaaatatttcaacgtgttttggtggtttatatggggtgtttatgaagtttggattctata 13818854  T
Q  155 atccaaactacataga 170  Q
    |||| |||||||||||    
T  13818855 atccgaactacataga 13818870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 95 - 170
Target Start/End: Complemental strand, 4656637 - 4656561
Alignment:
Q  95 gaaatgttttaacgtgttttgga-ggtttttatgagatgtttatgtcgttcggattatataatccaaactacataga 170  Q
    |||||||||||| |||||||  | |||||||||||  | ||||||||||||||||| ||||||||||||| ||||||    
T  4656637 gaaatgttttaatgtgtttttaaaggtttttatgatgtatttatgtcgttcggattctataatccaaactgcataga 4656561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 52 - 127
Target Start/End: Original strand, 40506623 - 40506699
Alignment:
Q  52 atcctatgagtttctcgcacgccttatttgaattctaaaattcgaaatgttttaacgtg-ttttggaggtttttatg 127  Q
    ||||||||||||||||| | ||| |||||| ||| |||||| |||||| ||| |||||| |||||||||||||||||    
T  40506623 atcctatgagtttctcgtatgccctatttggattgtaaaatccgaaatatttcaacgtgattttggaggtttttatg 40506699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 39 - 149
Target Start/End: Complemental strand, 31078898 - 31078788
Alignment:
Q  39 cattattttttctatcctatgagtttctcgcacgccttatttgaattctaaaattcgaaatgttttaacgtgttttggaggtttttatgagatgtttatg 138  Q
    |||||||||||   || |||||||||||||| |  | ||||||   ||||||||| |||||||||||||||||||||||  ||||||||  || ||||||    
T  31078898 cattatttttttcttcttatgagtttctcgcgcatcctatttggtctctaaaatttgaaatgttttaacgtgttttggaaatttttatggaatatttatg 31078799  T
Q  139 tcgttcggatt 149  Q
     ||||| ||||    
T  31078798 ccgttcagatt 31078788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 127
Target Start/End: Complemental strand, 8757282 - 8757209
Alignment:
Q  54 cctatgagtttctcgcacgccttatttgaattctaaaattcgaaatgttttaacgtgttttggaggtttttatg 127  Q
    |||||||||||||||| | ||||||||| | |||||||| | ||||||||  | ||||||| ||||||||||||    
T  8757282 cctatgagtttctcgccctccttatttggagtctaaaatccaaaatgtttccatgtgttttcgaggtttttatg 8757209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 169
Target Start/End: Original strand, 39555910 - 39555983
Alignment:
Q  95 gaaatgttttaacgtgttttggaggtttttatgagatgtttatgtcgttcggattatataatccaaactacatag 169  Q
    ||||||||| |||||||||| ||| |||||||  | ||||||||| ||| |||||||||||| |||||| |||||    
T  39555910 gaaatgtttcaacgtgtttttgagatttttatagggtgtttatgttgtt-ggattatataattcaaactgcatag 39555983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 69
Target Start/End: Complemental strand, 29026300 - 29026271
Alignment:
Q  40 attattttttctatcctatgagtttctcgc 69  Q
    ||||||||||||||||||||||||||||||    
T  29026300 attattttttctatcctatgagtttctcgc 29026271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 156
Target Start/End: Original strand, 7632640 - 7632768
Alignment:
Q  29 tatataatgtcattattttttctatcctatgagtttctcgcacgccttatttgaattctaaaattcgaaatgttttaacgtgttttgga-ggtttttatg 127  Q
    ||||| || |||||||||||   |||||||||||||| |   | |||||||  |||| ||||||| ||||| ||| ||||| |||| || |||||||||     
T  7632640 tatattatatcattatttttctcatcctatgagtttcacatgcaccttattcaaattttaaaatttgaaatatttcaacgtatttttgaaggtttttatc 7632739  T
Q  128 agatgtttatgtcgttcggattatataat 156  Q
     | |||||||||||||| |||| ||||||    
T  7632740 gggtgtttatgtcgttcagattctataat 7632768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 137
Target Start/End: Original strand, 26462337 - 26462429
Alignment:
Q  45 tttttctatcctatgagtttctcgcacgccttatttgaattctaaaattcgaaatgttttaacgtgttttggaggtttttatgagatgtttat 137  Q
    |||||||| | ||||||||| ||| ||| | ||||  |||| ||||||  ||||||||| ||||||||||| | |||||||| ||||| ||||    
T  26462337 tttttctaccttatgagtttttcgtacgtcctattcaaattataaaatctgaaatgtttcaacgtgttttgaaagtttttataagatgcttat 26462429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 182
Target Start/End: Complemental strand, 27157788 - 27157645
Alignment:
Q  39 cattattttttctatcctatgagtttctcgcacgccttatttgaattctaaaattcgaaatgttttaacgtg-ttttggaggtttttatgagatgtttat 137  Q
    ||||| |||||| | |||||||||||||||  ||   |||| | |||||||||| |||| | ||| |||||| |||||||| |||| ||| | | |||||    
T  27157788 cattactttttccaccctatgagtttctcgtgcgtgctattcggattctaaaatccgaattatttcaacgtggttttggagatttt-atggggtatttat 27157690  T
Q  138 gtcgttcggattatataatccaaactacatagagcgcacgataaa 182  Q
    | | |||||||| |||||||| || | ||||| ||||||||||||    
T  27157689 gccattcggattctataatccgaaatgcatagggcgcacgataaa 27157645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 36 - 185
Target Start/End: Complemental strand, 32556614 - 32556465
Alignment:
Q  36 tgtcattattttttctatcctatgagtttctcgcacgccttatttgaattctaaaattcgaaatgttttaacgtgttttggaggtttttatgagatgttt 135  Q
    |||||||| ||||| |||||||||||||||||||||| | |||| | ||| ||||||  ||||| || |||||| ||||||||||||||||||| |  ||    
T  32556614 tgtcattactttttttatcctatgagtttctcgcacgtcctattcggattttaaaatctgaaatattgtaacgtattttggaggtttttatgaggtaatt 32556515  T
Q  136 atgtcgttcggattatataatccaaactacatagagcgcacgataaatca 185  Q
    ||  |||| |||||||||||||| ||| | |||| |||| ||| ||||||    
T  32556514 ataccgtttggattatataatccgaacaaaatagggcgcgcgagaaatca 32556465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 56 - 172
Target Start/End: Complemental strand, 2749282 - 2749166
Alignment:
Q  56 tatgagtttctcgcacgccttatttgaattctaaaattcgaaatgttttaacgtgttttggaggtttttatgagatgtttatgtcgttcggattatataa 155  Q
    |||||||||||||| ||||  ||||  |||||||||| |||||||||| ||| ||||||||||||||||||| |   ||||||  ||||||||| |||||    
T  2749282 tatgagtttctcgcgcgcccaatttagattctaaaatccgaaatgtttcaacttgttttggaggtttttatggggcatttatggtgttcggattctataa 2749183  T
Q  156 tccaaactacatagagc 172  Q
    |||||| | ||||||||    
T  2749182 tccaaattgcatagagc 2749166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 83 - 126
Target Start/End: Original strand, 48400953 - 48400996
Alignment:
Q  83 attctaaaattcgaaatgttttaacgtgttttggaggtttttat 126  Q
    |||||||||| |||||||||||||||||||||||||||||||||    
T  48400953 attctaaaatccgaaatgttttaacgtgttttggaggtttttat 48400996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 83 - 161
Target Start/End: Original strand, 50549222 - 50549298
Alignment:
Q  83 attctaaaattcgaaatgttttaacgtgttttggaggtttttatgagatgtttatgtcgttcggattatataatccaaa 161  Q
    ||||||||||  ||||||||||||| |||| |||||||||  ||||| ||||||||| ||||| |||||||||||||||    
T  50549222 attctaaaatatgaaatgttttaacatgttgtggaggttt--atgaggtgtttatgttgttcgaattatataatccaaa 50549298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 54 - 174
Target Start/End: Complemental strand, 51474108 - 51473989
Alignment:
Q  54 cctatgagtttctcgcacgccttatttgaattctaaaattcgaaatgttttaacgtgttttggaggtttttatgagatgtttatgtcgttcggattatat 153  Q
    |||||||||||||||  |||| ||||  |||| ||||||  ||||||||||||||| ||||||  | ||||||| | |||||| ||| |||||||| |||    
T  51474108 cctatgagtttctcgtgcgccgtattcaaattataaaatctgaaatgttttaacgtcttttggtcg-ttttatggggtgtttacgtcattcggattctat 51474010  T
Q  154 aatccaaactacatagagcgc 174  Q
    ||||| |||||| ||| ||||    
T  51474009 aatccgaactacgtagggcgc 51473989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 44 - 114
Target Start/End: Original strand, 23404878 - 23404948
Alignment:
Q  44 ttttttctatcctatgagtttctcgcacgccttatttgaattctaaaattcgaaatgttttaacgtgtttt 114  Q
    ||||||| ||||||||||||||||||||| | |||| ||||| |||||| ||||| |||| ||| ||||||    
T  23404878 ttttttccatcctatgagtttctcgcacgtcatattcgaattttaaaatccgaaacgtttcaacatgtttt 23404948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 73 - 139
Target Start/End: Original strand, 23453328 - 23453393
Alignment:
Q  73 ccttatttgaattctaaaattcgaaatgttttaacgtgttttggaggtttttatgagatgtttatgt 139  Q
    |||||||||||||||||||| |||||||||||||| |  ||||||||| || |||| ||||||||||    
T  23453328 ccttatttgaattctaaaatccgaaatgttttaacataatttggaggtattcatga-atgtttatgt 23453393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 113
Target Start/End: Complemental strand, 10308309 - 10308233
Alignment:
Q  37 gtcattattttttctatcctatgagtttctcgcacgccttatttgaattctaaaattcgaaatgttttaacgtgttt 113  Q
    |||||||||||||| |   ||||||||||||||||||| |||||  |||||||||| | |||| ||| |||||||||    
T  10308309 gtcattattttttccactgtatgagtttctcgcacgccatatttagattctaaaatccaaaatatttcaacgtgttt 10308233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 157
Target Start/End: Complemental strand, 17339839 - 17339721
Alignment:
Q  39 cattattttttctatcctatgagtttctcgcacgccttatttgaattctaaaattcgaaatgttttaacgtgttttggaggtttttat-gagatgtttat 137  Q
    ||||| |||||| ||||||| ||||||||  | ||| ||||   ||||||||||  ||||| ||| || ||||||||||||||||||| |||| ||||||    
T  17339839 cattactttttccatcctatcagtttctcatatgccctattcagattctaaaatctgaaatatttaaatgtgttttggaggtttttatagaga-gtttat 17339741  T
Q  138 gtcgttcggattatataatc 157  Q
     |||||||| || |||||||    
T  17339740 ttcgttcgggttctataatc 17339721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 168
Target Start/End: Complemental strand, 15322336 - 15322251
Alignment:
Q  83 attctaaaattcgaaatgttttaacgtgttttggaggtttttatgagatgtttatgtcgttcggattatataatccaaactacata 168  Q
    |||||||||||| |||| ||||||||| |||||   | |||||| |  ||||||||||||| | ||| ||||||||||| ||||||    
T  15322336 attctaaaattcaaaatattttaacgtattttgatagattttataaagtgtttatgtcgtttgaattttataatccaaattacata 15322251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 60 - 184
Target Start/End: Original strand, 44053379 - 44053503
Alignment:
Q  60 agtttctcgcacgccttatttgaattctaaaattcgaaatgttttaacgtgttttggaggtttttatgagatgtttatgtcgttcggattatataatcca 159  Q
    ||||||||||||| | || | | ||| |||||| | |||| |||||||||| |||||||||||||||| ||| |||||| ||||||| ||||||||||||    
T  44053379 agtttctcgcacgtcctaatcggattataaaatccaaaatattttaacgtgctttggaggtttttatgggatatttatgccgttcgggttatataatcca 44053478  T
Q  160 aactacatagagcgcacgataaatc 184  Q
    ||||| |||| |||| ||| |||||    
T  44053479 aactatatagggcgcgcgagaaatc 44053503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 37 - 168
Target Start/End: Original strand, 43726562 - 43726693
Alignment:
Q  37 gtcattattttttctatcctatgagtttctcgcacgccttatttgaattctaaaattcgaaatgttttaacgtgttttggaggtttttatgagatgttta 136  Q
    ||||||| |||||| | | |||||||||||||| |||| |||| ||||| ||||||  ||||| ||||| | |||||| |||||||| ||||| ||||||    
T  43726562 gtcattactttttccaccttatgagtttctcgcgcgccctattagaattttaaaatcagaaatattttatcatgttttagaggttttgatgaggtgttta 43726661  T
Q  137 tgtcgttcggattatataatccaaactacata 168  Q
    | | ||||| |||||||||||| |||||||||    
T  43726662 tatagttcgaattatataatccgaactacata 43726693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 41 - 156
Target Start/End: Original strand, 15462021 - 15462136
Alignment:
Q  41 ttattttttctatcctatgagtttctcgcacgccttatttgaattctaaaattcgaaatgttttaacgtgttttggaggtttttatgagatgtttatgtc 140  Q
    |||||||||  | ||||||||||| |||||| |||||||| || | ||||||  ||||| ||| |||||||||| |||||||||||| | |||||||| |    
T  15462021 ttatttttttcaccctatgagtttttcgcacaccttatttaaaatttaaaatctgaaatatttaaacgtgttttagaggtttttatggggtgtttatgcc 15462120  T
Q  141 gttcggattatataat 156  Q
    ||| ||||| ||||||    
T  15462121 gtttggattctataat 15462136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 32 - 174
Target Start/End: Complemental strand, 26665598 - 26665455
Alignment:
Q  32 ataatgtcattattttttctatcctatgagtttctcgcacgccttatttgaattctaaaattcgaaatgttttaacgtgtttt-ggaggtttttatgaga 130  Q
    |||| ||| |||||||| | |||||||||||||||||| || | |||||| ||| |||||| |||||| ||| ||| ||||||  ||  |||||||| |     
T  26665598 ataaggtcgttatttttcccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaacatgttttccgaaatttttatgggt 26665499  T
Q  131 tgtttatgtcgttcggattatataatccaaactacatagagcgc 174  Q
    |||||||| |||||||||| |||||| |||||| ||||| ||||    
T  26665498 tgtttatgccgttcggattctataattcaaactgcatagggcgc 26665455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 59 - 138
Target Start/End: Original strand, 51715027 - 51715106
Alignment:
Q  59 gagtttctcgcacgccttatttgaattctaaaattcgaaatgttttaacgtgttttggaggtttttatgagatgtttatg 138  Q
    ||||||||||| ||||  ||| | ||||||||||  ||||||||||||||||||||||||||||||||| | ||||||||    
T  51715027 gagtttctcgcgcgcccgattcggattctaaaatctgaaatgttttaacgtgttttggaggtttttatggggtgtttatg 51715106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 81 - 169
Target Start/End: Original strand, 22318224 - 22318312
Alignment:
Q  81 gaattctaaaattcgaaatgttttaacgtgttttggaggtttttatgagatgtttatgtcgttcggattatataatccaaactacatag 169  Q
    ||||| ||||||  ||||||||||||| ||||||| ||||||||||||||||||||||   |||| ||| |||||||| |||| |||||    
T  22318224 gaattttaaaatatgaaatgttttaacatgttttgaaggtttttatgagatgtttatgctattcgaattctataatccgaactgcatag 22318312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 103 - 174
Target Start/End: Complemental strand, 42111017 - 42110945
Alignment:
Q  103 ttaacgtgtttt-ggaggtttttatgagatgtttatgtcgttcggattatataatccaaactacatagagcgc 174  Q
    |||||||||||| ||||||||||||| | ||||||||||||||| ||| |||||||||| || ||||| ||||    
T  42111017 ttaacgtgtttttggaggtttttatggggtgtttatgtcgttcgaattctataatccaacctgcatagggcgc 42110945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 162
Target Start/End: Original strand, 1750080 - 1750187
Alignment:
Q  56 tatgagtttctcgcacgccttatttgaattctaaaattcgaaatgttttaacgtgtttt-ggaggtttttatgagatgtttatgtcgttcggattatata 154  Q
    |||||||||||||  || | |||||| ||||||||||   |||||||| |||||| ||| |||||||| |||  | ||||||| ||||||||||| ||||    
T  1750080 tatgagtttctcgtgcgtcctatttggattctaaaatctaaaatgtttcaacgtgatttaggaggtttgtatagggtgtttatttcgttcggattctata 1750179  T
Q  155 atccaaac 162  Q
    ||||||||    
T  1750180 atccaaac 1750187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 169
Target Start/End: Original strand, 20704973 - 20705056
Alignment:
Q  87 taaaattcgaaatgttttaacgtgtttt-ggaggtttttatgagatgtttatgtcgttcggattatataatccaaactacatag 169  Q
    ||||||| ||||||||||||| | |||| |||||||||||||||||||| ||  |||| ||||| ||||||| ||||| |||||    
T  20704973 taaaatttgaaatgttttaacatatttttggaggtttttatgagatgttgataccgtttggattctataatctaaactgcatag 20705056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 101 - 178
Target Start/End: Complemental strand, 39745597 - 39745522
Alignment:
Q  101 ttttaacgtgttttggaggtttttatgagatgtttatgtcgttcggattatataatccaaactacatagagcgcacga 178  Q
    |||||||||||||| ||||||| |||  |||||||||| |||||||||  |||||||| |||| |||||| |||||||    
T  39745597 ttttaacgtgttttagaggtttatat--gatgtttatgccgttcggatcctataatccgaactgcatagaacgcacga 39745522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 127
Target Start/End: Original strand, 21313435 - 21313500
Alignment:
Q  62 tttctcgcacgccttatttgaattctaaaattcgaaatgttttaacgtgttttggaggtttttatg 127  Q
    |||||||| ||||||||| | |||||||||| | |||| ||||||| |||||| ||||||||||||    
T  21313435 tttctcgcgcgccttattcggattctaaaatgcaaaatattttaacatgttttagaggtttttatg 21313500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 199
Target Start/End: Complemental strand, 30670942 - 30670797
Alignment:
Q  55 ctatgagtttctcgcacgccttatttgaattctaaaattcgaaatgttttaacgtgttttggaggtttttat-gagatgtttatgtcgttcggattatat 153  Q
    ||||||||||||||| |  |||||| | ||||||||||  |||||||||||| |||||||| |  ||||||| | | ||||||||  ||||| ||| |||    
T  30670942 ctatgagtttctcgcgcatcttattcggattctaaaatctgaaatgttttaatgtgttttgaaaatttttataggggtgtttatgctgttcgaattctat 30670843  T
Q  154 aatccaaactacatagagcgcacgataaatcaacaagatggaaaaa 199  Q
    |||  |||||||||||  |||| || ||||||| | | ||||||||    
T  30670842 aatttaaactacataggacgcatgagaaatcaatatggtggaaaaa 30670797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 155
Target Start/End: Original strand, 33995665 - 33995725
Alignment:
Q  95 gaaatgttttaacgtgttttggaggtttttatgagatgtttatgtcgttcggattatataa 155  Q
    ||||||||| || |||||||||||||||||||| ||| ||||||| ||| ||||| |||||    
T  33995665 gaaatgtttcaatgtgttttggaggtttttatgggatatttatgttgtttggattctataa 33995725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 123
Target Start/End: Original strand, 18395498 - 18395581
Alignment:
Q  40 attattttttctatcctatgagtttctcgcacgccttatttgaattctaaaattcgaaatgttttaacgtgttt-tggaggtttt 123  Q
    ||||||||| | ||||||||||||| |||| |||| |||||| ||||| |||| |||||| ||| || |||||| ||||||||||    
T  18395498 attatttttcccatcctatgagttt-tcgcgcgccctatttgtattctgaaatccgaaatatttcaatgtgtttgtggaggtttt 18395581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 54 - 169
Target Start/End: Original strand, 43050124 - 43050239
Alignment:
Q  54 cctatgagtttctcgcacgccttatttgaattctaaaattcgaaatgttttaacgtgttttggaggtttttatgagatgtttatgtcgttcggattatat 153  Q
    ||||||||||||| |||||||||||| | ||| ||||||  ||||||||| |||||||||||||||||||||   | | ||||||||||| ||||| |||    
T  43050124 cctatgagtttcttgcacgccttattcggattttaaaatctgaaatgtttcaacgtgttttggaggtttttacagggtatttatgtcgtttggattctat 43050223  T
Q  154 aatccaaactacatag 169  Q
    ||||| |||| |||||    
T  43050224 aatccgaactgcatag 43050239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 56 - 156
Target Start/End: Complemental strand, 37536183 - 37536083
Alignment:
Q  56 tatgagtttctcgcacgccttatttgaattctaaaattcgaaatgttttaacgtgttttggaggtttttatgagatgtttatgtcgttcggattatataa 155  Q
    |||||| ||||||| ||| ||||||  ||| ||||||||||||||||||||| ||||||  ||||| ||| |||||||||||||| ||| ||||||||||    
T  37536183 tatgaggttctcgcgcgctttattttgattttaaaattcgaaatgttttaacatgttttaaaggttcttacgagatgtttatgtcattcagattatataa 37536084  T
Q  156 t 156  Q
    |    
T  37536083 t 37536083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 61 - 163
Target Start/End: Original strand, 22417257 - 22417354
Alignment:
Q  61 gtttctcgcacgccttatttgaattctaaaattcgaaatgttttaacgtgttttggaggtttttatgagatgtttatgtcgttcggattatataatccaa 160  Q
    |||||||| ||||| ||||  ||||||||||| |||||||||     |||||||||||||||||||  | |||||||| |||| |||||||||||||| |    
T  22417257 gtttctcgtacgccctattcaaattctaaaatccgaaatgtt-----gtgttttggaggtttttatagggtgtttatgccgtttggattatataatccga 22417351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 39 - 157
Target Start/End: Original strand, 35453191 - 35453309
Alignment:
Q  39 cattattttttctatcctatgagtttctcgcacgccttatttgaattctaaaattcgaaatgttttaacgtgttttggaggtttttatgagatgtttatg 138  Q
    ||||| |||||||| |||||||||||||||   ||| ||||| |||| ||||||||||||||||||||  | ||||  ||||||||||  ||| ||||||    
T  35453191 cattactttttctaccctatgagtttctcgtgtgccctatttaaattataaaattcgaaatgttttaatatattttacaggtttttataggatatttatg 35453290  T
Q  139 tcgttcggattatataatc 157  Q
     | |||  |||||||||||    
T  35453291 acattcaaattatataatc 35453309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 199
Target Start/End: Original strand, 34190767 - 34190927
Alignment:
Q  39 cattattttttctatcctatgagtttctcgcacgccttatttgaattctaaaattcgaaatgttttaacgtgttttgg-aggtttttatgagatgtttat 137  Q
    ||||| |||||| | | ||||||| |||| || | | |||| ||||||||||||| |||||||||||| ||||||||| || |||||||||| |||||||    
T  34190767 cattactttttccaccttatgagtatctcccatgtcctattcgaattctaaaatt-gaaatgttttaatgtgttttggaagatttttatgaggtgtttat 34190865  T
Q  138 gtcgttcggattatataatccaaactacatagagcgcacgataaatcaacaagatggaaaaa 199  Q
    |   ||||||||  |||||||||| | ||||  ||||| || ||||||| | | ||||||||    
T  34190866 gctattcggatttaataatccaaattgcataaggcgcatgagaaatcaatacggtggaaaaa 34190927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 45 - 169
Target Start/End: Original strand, 24510897 - 24511021
Alignment:
Q  45 tttttctatcctatgagtttctcgcacgccttatttgaattctaaaattcgaaatgttttaacgtgttttggaggtttttatgagatgtttatgtcgttc 144  Q
    |||||| | ||||||||||| || ||| || |||| | ||| ||||||  ||||| ||| ||||| ||||||||||||||||| |||||||||| ||||     
T  24510897 tttttccaccctatgagtttttcacacaccctattcggattttaaaatctgaaatatttaaacgtattttggaggtttttatgggatgtttatgccgttt 24510996  T
Q  145 ggattatataatccaaactacatag 169  Q
    | ||| |||||| | |||| |||||    
T  24510997 gaattctataattcgaactgcatag 24511021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 39 - 137
Target Start/End: Original strand, 37267708 - 37267806
Alignment:
Q  39 cattattttttctatcctatgagtttctcgcacgccttatttgaattctaaaattcgaaatgttttaacgtgttttggaggtttttatgagatgtttat 137  Q
    ||||| |||||| | | |||||| ||||||   ||| |||||| |||||||||| |||||| ||||||||||||||||  | ||||||||||| |||||    
T  37267708 cattactttttccaccttatgagcttctcgtgtgccctatttggattctaaaatccgaaatattttaacgtgttttgggaggttttatgagatttttat 37267806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 127
Target Start/End: Original strand, 19572582 - 19572651
Alignment:
Q  58 tgagtttctcgcacgccttatttgaattctaaaattcgaaatgttttaacgtgttttggaggtttttatg 127  Q
    ||||||||| ||  ||| |||||| ||| ||||||  ||||||||||||||||||||||| |||||||||    
T  19572582 tgagtttctggcgtgccatatttggattttaaaatctgaaatgttttaacgtgttttggaagtttttatg 19572651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 158
Target Start/End: Original strand, 13029246 - 13029322
Alignment:
Q  82 aattctaaaattcgaaatgttttaacgtgttttggaggtttttatgagatgtttatgtcgttcggattatataatcc 158  Q
    ||||||||| |  ||||||||||||||| ||||| |||||||| |  | ||||||||||||||  ||||||||||||    
T  13029246 aattctaaagtctgaaatgttttaacgtattttgaaggtttttgtagggtgtttatgtcgttcaaattatataatcc 13029322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 155
Target Start/End: Original strand, 23046586 - 23046654
Alignment:
Q  87 taaaattcgaaatgttttaacgtgttttggaggtttttatgagatgtttatgtcgttcggattatataa 155  Q
    ||||||| |||||||||||| | ||||||||| |||||||| | ||||||||| ||| | |||||||||    
T  23046586 taaaatttgaaatgttttaatgcgttttggagatttttatggggtgtttatgttgtttgtattatataa 23046654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 157
Target Start/End: Complemental strand, 22442793 - 22442690
Alignment:
Q  54 cctatgagtttctcgcacgccttatttgaattctaaaattcgaaatgttttaacgtgttttggaggtttttatgagatgtttatgtcgttcggattatat 153  Q
    ||||||||||| |||  | || |||| |||| || ||||  ||||||| ||||||| |||||||||||||| || | ||||||||||||| | | |||||    
T  22442793 cctatgagtttgtcgtgcaccctattcgaatcctcaaatcagaaatgtcttaacgtattttggaggtttttgtggggtgtttatgtcgtttgaaatatat 22442694  T
Q  154 aatc 157  Q
    ||||    
T  22442693 aatc 22442690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 114
Target Start/End: Original strand, 24166791 - 24166863
Alignment:
Q  42 tattttttctatcctatgagtttctcgcacgccttatttgaattctaaaattcgaaatgttttaacgtgtttt 114  Q
    ||||||||| | |||||||||||||| | |||| |||| | ||||| ||||||||||| ||| ||| ||||||    
T  24166791 tattttttccaccctatgagtttctcacgcgccctattcggattcttaaattcgaaatatttcaacatgtttt 24166863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 138
Target Start/End: Original strand, 34810282 - 34810382
Alignment:
Q  39 cattattttttctatcctatgagtttctcgcacgccttatttgaattctaaaattcgaaatgttttaacgtg-ttttggaggtttttatgagatgtttat 137  Q
    ||||| ||||| || | |||||||||||||| | |  ||||| |||||||||||||||||| ||| ||  || ||||| || |||||||| |||||||||    
T  34810282 cattactttttgtaccttatgagtttctcgcgcactctatttaaattctaaaattcgaaatatttcaatatgtttttgaagatttttatgggatgtttat 34810381  T
Q  138 g 138  Q
    |    
T  34810382 g 34810382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 76 - 161
Target Start/End: Complemental strand, 30525900 - 30525814
Alignment:
Q  76 tatttgaattctaaaattcgaaatgttttaacgtgtttt-ggaggtttttatgagatgtttatgtcgttcggattatataatccaaa 161  Q
    |||| ||||| || ||| |||||||||| |||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||    
T  30525900 tattcgaattatagaatccgaaatgtttcaacgtgtttttggaggtttttatgagatgtttatgccgttcggattctataatccaaa 30525814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 52 - 174
Target Start/End: Original strand, 9929304 - 9929426
Alignment:
Q  52 atcctatgagtttctcgcacgccttatttgaattctaaaattcgaaatgttttaacgtgttttggaggtttttatgagatgtttatgtcgttcggattat 151  Q
    ||||||||||| | ||||||  | |||||  ||| ||||||  ||||| ||| ||||||||||||||||||||||||| |||||||| |||||| ||| |    
T  9929304 atcctatgagtatgtcgcacctcctatttagattttaaaatctgaaatctttcaacgtgttttggaggtttttatgaggtgtttatgacgttcgaattct 9929403  T
Q  152 ataatccaaactacatagagcgc 174  Q
    ||||||| |||| ||||| ||||    
T  9929404 ataatccgaactgcatagggcgc 9929426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 37 - 163
Target Start/End: Complemental strand, 33240971 - 33240846
Alignment:
Q  37 gtcattattttttctatcctatgagtttctcgcacgccttatttgaattctaaaattcgaaatgttttaacgtgttttggaggtttttatgagatgttta 136  Q
    ||||||||||||| ||||||||||||||||||  |||| |||| | |||||||||| |||||| ||| ||||| ||||| ||||||||||| | | ||||    
T  33240971 gtcattattttttatatcctatgagtttctcgtgcgccctattcggattctaaaatccgaaatatttcaacgt-ttttgaaggtttttatggggtattta 33240873  T
Q  137 tgtcgttcggattatataatccaaact 163  Q
    |   ||||||||| || ||||||||||    
T  33240872 tacagttcggattctaaaatccaaact 33240846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 54 - 150
Target Start/End: Original strand, 2513100 - 2513196
Alignment:
Q  54 cctatgagtttctcgcacgccttatttgaattctaaaattcgaaatgttttaacgtgttttggaggtttttatgagatgtttatgtcgttcggatta 150  Q
    |||||||||||||| | |||||||||   |||||||||| | |||||||||||| || ||||||| |||||||||| ||||||||| ||||| ||||    
T  2513100 cctatgagtttctctcgcgccttattcagattctaaaatccaaaatgttttaacatgatttggagatttttatgaggtgtttatgttgttcgaatta 2513196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 56 - 126
Target Start/End: Complemental strand, 10242626 - 10242556
Alignment:
Q  56 tatgagtttctcgcacgccttatttgaattctaaaattcgaaatgttttaacgtgttttggaggtttttat 126  Q
    ||||||||| |||| ||||||||||| |||| |||||  |||||||||||||||||||||||| |||||||    
T  10242626 tatgagtttttcgcgcgccttatttggattccaaaatctgaaatgttttaacgtgttttggagatttttat 10242556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 54 - 165
Target Start/End: Complemental strand, 18075623 - 18075512
Alignment:
Q  54 cctatgagtttctcgcacgccttatttgaattctaaaattcgaaatgttttaacgtgttttggaggtttttatgagatgtttatgtcgttcggattatat 153  Q
    ||||||||||||||   |||| ||||  |||| ||||||  ||||| ||||||||| |||||| |||||||||| | ||||||| |||||| |||| |||    
T  18075623 cctatgagtttctcatgcgccctattcaaattataaaatctgaaatattttaacgtcttttggtggtttttatggggtgtttatttcgttcagattctat 18075524  T
Q  154 aatccaaactac 165  Q
    ||||| ||||||    
T  18075523 aatccgaactac 18075512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 51 - 148
Target Start/End: Original strand, 33450812 - 33450910
Alignment:
Q  51 tatcctatgagtttctcgcacgccttatttgaattctaaaattcgaaatgttttaacgtg-ttttggaggtttttatgagatgtttatgtcgttcggat 148  Q
    ||||||||||| |||| || || | |||| | ||||||||||||||||| ||| |||||| ||||||||| ||||| ||| ||||||||| ||||||||    
T  33450812 tatcctatgagcttcttgcgcgtcctattcggattctaaaattcgaaatatttcaacgtgtttttggaggcttttaggaggtgtttatgttgttcggat 33450910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 83 - 170
Target Start/End: Complemental strand, 2119305 - 2119217
Alignment:
Q  83 attctaaaattcgaaatgttttaacgtgttttggagg-tttttatgagatgtttatgtcgttcggattatataatccaaactacataga 170  Q
    |||||| ||| |||||| |||||||||||||| || | ||||||||| ||||||||||| |||| |||  |||||||||||| ||||||    
T  2119305 attctacaatccgaaatattttaacgtgtttttgaagatttttatgaaatgtttatgtctttcgaattccataatccaaactgcataga 2119217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 45 - 172
Target Start/End: Complemental strand, 29263921 - 29263793
Alignment:
Q  45 tttttctatcctatgagtttctcgcacgccttatttgaattctaaaattcgaaatgttttaacgtgttttggagg-tttttatgagatgtttatgtcgtt 143  Q
    ||||||||| ||| |||||||||||||| ||||||   ||| ||||||   |||||||| || ||||||| || | |||||||  | |||||||||||||    
T  29263921 tttttctattctacgagtttctcgcacgtcttattcagattttaaaatcgaaaatgtttcaatgtgtttttgaagatttttattgggtgtttatgtcgtt 29263822  T
Q  144 cggattatataatccaaactacatagagc 172  Q
    | |||| ||||||| |||| |||||||||    
T  29263821 cagattctataatctaaaccacatagagc 29263793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 62 - 163
Target Start/End: Complemental strand, 29389254 - 29389152
Alignment:
Q  62 tttctcgcacgccttatttgaattctaaaattcgaaatgttttaacgtg-ttttggaggtttttatgagatgtttatgtcgttcggattatataatccaa 160  Q
    ||||||||||||| ||||   ||| |||||| |||||||||| |||||| ||||| ||||||||||  | ||||||||  ||||||||| |||||||| |    
T  29389254 tttctcgcacgccctattcagattttaaaatccgaaatgtttcaacgtgtttttgaaggtttttattgggtgtttatgctgttcggattttataatccga 29389155  T
Q  161 act 163  Q
    |||    
T  29389154 act 29389152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 169
Target Start/End: Complemental strand, 21974876 - 21974767
Alignment:
Q  60 agtttctcgcacgccttatttgaattctaaaattcgaaatgttttaacgtgttttggaggtttttatgagatgtttatgtcgttcggattatataatcca 159  Q
    |||||||||||||   |||| | ||| |||||| |||||| ||||||| | ||||  | |||||||| |||| |||||| |||| |||||||| |||||     
T  21974876 agtttctcgcacgttctattcgcattttaaaatccgaaatattttaacatattttttaagtttttataagatatttatgccgtttggattatacaatccg 21974777  T
Q  160 aactacatag 169  Q
    ||||||||||    
T  21974776 aactacatag 21974767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 172
Target Start/End: Original strand, 14713897 - 14713950
Alignment:
Q  119 gtttttatgagatgtttatgtcgttcggattatataatccaaactacatagagc 172  Q
    ||||||||| ||  ||||||| ||||||||| ||||||||||||| ||||||||    
T  14713897 gtttttatgggacatttatgttgttcggattctataatccaaactgcatagagc 14713950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 123
Target Start/End: Complemental strand, 32826798 - 32826713
Alignment:
Q  39 cattattttttctatcctatgagtttctcgcacgccttatttgaattctaaaattcgaaatgttttaacgtg-ttttggaggtttt 123  Q
    ||||| |||||| || ||||||||||||||| ||   ||||||||||||||||||  |||| ||| |||| | |||||||||||||    
T  32826798 cattactttttccattctatgagtttctcgcgcgttctatttgaattctaaaattttaaatatttcaacgagtttttggaggtttt 32826713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 183
Target Start/End: Original strand, 34949017 - 34949117
Alignment:
Q  83 attctaaaattcgaaatgttttaacgtgttttggaggtttttatgagatgtttatgtcgttcggattatataatccaaactacatagagcgcacgataaa 182  Q
    |||||||||| |||||| ||| ||  ||||||||| | ||||||  | |||||||| | || | ||||||||||| ||||| ||||||| |||||| |||    
T  34949017 attctaaaatacgaaatatttgaatatgttttggaagattttatagggtgtttatgccatttgaattatataatctaaactgcatagagtgcacgagaaa 34949116  T
Q  183 t 183  Q
    |    
T  34949117 t 34949117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 56 - 163
Target Start/End: Complemental strand, 27707287 - 27707179
Alignment:
Q  56 tatgagtttctcgcacgccttattt-gaattctaaaattcgaaatgttttaacgtgttttggaggtttttatgagatgtttatgtcgttcggattatata 154  Q
    |||||||||||||||| || ||||| | |||| ||||||||| || ||||||| |||||||||  |||||||| ||||||||| || |||||||| ||||    
T  27707287 tatgagtttctcgcacaccctattttggattcaaaaattcgatatattttaacatgttttggaaatttttatgggatgtttatatcattcggattctata 27707188  T
Q  155 atccaaact 163  Q
    |||||||||    
T  27707187 atccaaact 27707179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 56 - 163
Target Start/End: Complemental strand, 23994453 - 23994346
Alignment:
Q  56 tatgagtttctcgcacgccttatttgaattctaaaattcgaaatgttttaacgtgttttggaggtttttatgagatgtttatgtcgttcggattatataa 155  Q
    |||||||||| ||| |||| |||| ||||| ||||||| | |  |||||||| ||||||||||||||| ||| | ||||||||| |||||||||||||||    
T  23994453 tatgagtttcccgcgcgccctattcgaattataaaatttgtatagttttaacatgttttggaggttttcatggggtgtttatgttgttcggattatataa 23994354  T
Q  156 tccaaact 163  Q
    || |||||    
T  23994353 tctaaact 23994346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 52 - 169
Target Start/End: Complemental strand, 28503345 - 28503229
Alignment:
Q  52 atcctatgagtttctcgcacgccttatttgaattctaaaattcgaaatgttttaacgtgttttggaggtttttatgagatgtttatgtcgttcggattat 151  Q
    ||||||||||||||||||   ||||||| ||||||||||||  ||||| ||| ||||| |||||||||||||||||   | |||||| |||||| ||| |    
T  28503345 atcctatgagtttctcgcga-ccttattcgaattctaaaatctgaaatatttcaacgtattttggaggtttttatggagtatttatgccgttcgaatttt 28503247  T
Q  152 ataatccaaactacatag 169  Q
    |||||||||||| |||||    
T  28503246 ataatccaaactgcatag 28503229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 76 - 164
Target Start/End: Original strand, 40491708 - 40491797
Alignment:
Q  76 tatttgaattctaaaattcgaaatgttttaacgtgtttt-ggaggtttttatgagatgtttatgtcgttcggattatataatccaaacta 164  Q
    |||||| |||||||||| | |||||||| |||||||||| ||||||||||||||| |||||||| ||||  |||| ||||||||||||||    
T  40491708 tatttggattctaaaatccaaaatgtttcaacgtgtttttggaggtttttatgaggtgtttatgccgtttagattctataatccaaacta 40491797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 54 - 140
Target Start/End: Original strand, 8217116 - 8217202
Alignment:
Q  54 cctatgagtttctcgcacgccttatttgaattctaaaattcgaaatgttttaacgtgttttggaggtttttatgagatgtttatgtc 140  Q
    |||| ||||||||||| |||| ||||  |||||||||||  |||||||||||||||||||| ||| |||||||| | ||||||||||    
T  8217116 cctacgagtttctcgcgcgccctattcaaattctaaaatctgaaatgttttaacgtgtttttgagatttttatggggtgtttatgtc 8217202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 52 - 127
Target Start/End: Original strand, 36183333 - 36183408
Alignment:
Q  52 atcctatgagtttctcgcacgccttatttgaattctaaaattcgaaatgttttaacgtgttttggaggtttttatg 127  Q
    |||||||||||||||||  |||| |||| | |||||||||| |||||||||| ||| | |||||||||||||||||    
T  36183333 atcctatgagtttctcgtgcgccatattcggattctaaaatccgaaatgtttcaacatattttggaggtttttatg 36183408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 169
Target Start/End: Original strand, 17223081 - 17223194
Alignment:
Q  57 atgagtttctcgcacgccttatttgaattctaaaattcgaaatgttttaacgtg-ttttggaggtttttatgagatgtttatgtcgttcggattatataa 155  Q
    ||||||||||| | ||||||||||  ||||||||||  ||||| ||| |||||| ||||| ||||||||||||| ||| |||   ||||||||| |||||    
T  17223081 atgagtttctcacgcgccttatttagattctaaaatctgaaatatttcaacgtgtttttgcaggtttttatgaggtgtgtatactgttcggattctataa 17223180  T
Q  156 tccaaactacatag 169  Q
    | |||||| |||||    
T  17223181 ttcaaactgcatag 17223194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 114
Target Start/End: Original strand, 33043868 - 33043937
Alignment:
Q  45 tttttctatcctatgagtttctcgcacgccttatttgaattctaaaattcgaaatgttttaacgtgtttt 114  Q
    |||||| ||||||||||||||| |||| || ||||| |||||||||||  ||||| ||||||||||||||    
T  33043868 tttttccatcctatgagtttcttgcacaccctatttaaattctaaaatctgaaatattttaacgtgtttt 33043937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 83 - 157
Target Start/End: Original strand, 32075876 - 32075949
Alignment:
Q  83 attctaaaattcgaaatgttttaacgtgttttggaggtttttatgagatgtttatgtcgttcggattatataatc 157  Q
    |||||||||| | ||||||||||||||||||| |||||||||||| ||  |||||||  || |||||||||||||    
T  32075876 attctaaaatccaaaatgttttaacgtgttttagaggtttttatg-gagttttatgtgatttggattatataatc 32075949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 52 - 114
Target Start/End: Complemental strand, 32177369 - 32177307
Alignment:
Q  52 atcctatgagtttctcgcacgccttatttgaattctaaaattcgaaatgttttaacgtgtttt 114  Q
    |||||||||||||||| |||||| |||| | ||||||||||  ||||||||||||||| ||||    
T  32177369 atcctatgagtttctcacacgccctattcgtattctaaaatctgaaatgttttaacgtatttt 32177307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 178
Target Start/End: Original strand, 19972327 - 19972428
Alignment:
Q  78 tttgaattctaaaattcgaaatgttttaacgtgttttgga-ggtttttatgagatgtttatgtcgttcggattatataatccaaactacatagagcgcac 176  Q
    |||| |||||||||| | | |||||||||||||||||| | ||  |||||  |||||||||| |||||||||| |||||| | |||| |||||| |||||    
T  19972327 tttggattctaaaatccaagatgttttaacgtgttttgaaggggatttataggatgtttatggcgttcggattctataattcgaacttcatagaacgcac 19972426  T
Q  177 ga 178  Q
    ||    
T  19972427 ga 19972428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 158
Target Start/End: Original strand, 7599443 - 7599519
Alignment:
Q  83 attctaaaattcgaaatgttttaacgtgtttt-ggaggtttttatgagatgtttatgtcgttcggattatataatcc 158  Q
    ||||||||||| ||||| ||| || ||||||| |||||||||||| |  |||| |||||||||||||| ||||||||    
T  7599443 attctaaaatttgaaatatttaaaggtgtttttggaggtttttataaagtgttaatgtcgttcggattttataatcc 7599519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 155
Target Start/End: Complemental strand, 13169776 - 13169717
Alignment:
Q  96 aaatgttttaacgtgttttggaggtttttatgagatgtttatgtcgttcggattatataa 155  Q
    |||| |||| |||| |||||||||||||||||   |||| ||||||||||||||||||||    
T  13169776 aaatattttgacgtattttggaggtttttatggagtgttgatgtcgttcggattatataa 13169717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 169
Target Start/End: Original strand, 22017661 - 22017736
Alignment:
Q  95 gaaatgttttaacgtgtttt-ggaggtttttatgagatgtttatgtcgttcggattatataatccaaactacatag 169  Q
    ||||||||| |||| ||||| ||||||||||||| | |||||||| | |||||||| |||||||| |||| |||||    
T  22017661 gaaatgtttcaacgcgtttttggaggtttttatggggtgtttatgccattcggattctataatccgaactgcatag 22017736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 114
Target Start/End: Complemental strand, 27549812 - 27549737
Alignment:
Q  39 cattattttttctatcctatgagtttctcgcacgccttatttgaattctaaaattcgaaatgttttaacgtgtttt 114  Q
    ||||| ||||||  || ||||||||||||||||  | |||||  ||||||||||| ||||||||| ||||||||||    
T  27549812 cattactttttccgtcatatgagtttctcgcacatcatatttagattctaaaatttgaaatgtttcaacgtgtttt 27549737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 114
Target Start/End: Complemental strand, 35631302 - 35631225
Alignment:
Q  37 gtcattattttttctatcctatgagtttctcgcacgccttatttgaattctaaaattcgaaatgttttaacgtgtttt 114  Q
    ||||||| |||| | | ||||||||||||||| ||||| |||||  ||||||||||  ||||| ||| ||||||||||    
T  35631302 gtcattacttttcccaccctatgagtttctcggacgccgtatttctattctaaaatctgaaatatttaaacgtgtttt 35631225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 124
Target Start/End: Complemental strand, 37928133 - 37928048
Alignment:
Q  39 cattattttttctatcctatgagtttctcgcacgccttatttgaattctaaaattcgaaatgttttaacgtgttttggaggttttt 124  Q
    |||||||||| ||| | | ||||||||||||||| | |||||| |||||| ||| |||||| ||| ||| ||||||| ||| ||||    
T  37928133 cattatttttcctaccgtgtgagtttctcgcacgtcctatttggattctataatacgaaatatttcaacatgttttgaaggctttt 37928048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 156
Target Start/End: Original strand, 333441 - 333501
Alignment:
Q  96 aaatgttttaacgtgttttggaggtttttatgagatgtttatgtcgttcggattatataat 156  Q
    |||| ||||||||||||||||  |||| |||||| ||||||||  |||| |||||||||||    
T  333441 aaatattttaacgtgttttgggagtttctatgaggtgtttatgctgttcagattatataat 333501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 41 - 156
Target Start/End: Complemental strand, 171 - 56
Alignment:
Q  41 ttattttttctatcctatgagtttctcgcacgccttatttgaattctaaaattcgaaatgttttaacgtgttttggaggtttttatgagatgtttatgtc 140  Q
    |||||||||  | ||||||||||| |||||| |||||||| || | ||||||  ||||| ||| |||||||||| |||||||||||| | |||||||| |    
T  171 ttatttttttcaccctatgagtttttcgcacaccttatttaaaatttaaaatctgaaatatttaaacgtgttttagaggtttttatggggtgtttatgcc 72  T
Q  141 gttcggattatataat 156  Q
    ||| ||||| ||||||    
T  71 gtttggattctataat 56  T

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Target: scaffold0110 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 54 - 168
Target Start/End: Original strand, 6417 - 6532
Alignment:
Q  54 cctatgagtttctcgcacgccttatttgaattctaaaattcgaaatgttttaacgtgttttg-gaggtttttatgagatgtttatgtcgttcggattata 152  Q
    |||||||||||||||||| || || | | ||| || ||| | |||||||| ||||| ||||  ||||||||||||||  |||||||||||||||||| ||    
T  6417 cctatgagtttctcgcacaccataataggattttagaatccaaaatgtttcaacgtatttttagaggtttttatgaggggtttatgtcgttcggattcta 6516  T
Q  153 taatccaaactacata 168  Q
    |||||| |||| ||||    
T  6517 taatccgaactgcata 6532  T

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Target: scaffold0239 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0239
Description:

Target: scaffold0239; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 188
Target Start/End: Complemental strand, 16647 - 16579
Alignment:
Q  120 tttttatgagatgtttatgtcgttcggattatataatccaaactacatagagcgcacgataaatcaaca 188  Q
    |||||||| | ||||||||||||| |||||||||||| ||||||  |||| | |||||| |||||||||    
T  16647 tttttatggggtgtttatgtcgtttggattatataattcaaactttatagggtgcacgagaaatcaaca 16579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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