View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5581_low_13 (Length: 238)
Name: NF5581_low_13
Description: NF5581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5581_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 45195669 - 45195449
Alignment:
| Q |
1 |
cgcaacccaaatcatccaaaacaagagagactgaattatattgtttatgttatgcatccacaccaagtcatccatcttgaatcaagtcatgtcttccatg |
100 |
Q |
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| T |
45195669 |
cgcaacccaaatcatccaaaaca-gagagactgaattatattgtttatgttatgcatccacaccaagtcatccatcttgaatcaagtcatgtcttccatg |
45195571 |
T |
|
| Q |
101 |
ccaaaaggatcttgatcatttctctaatacatgtttggacccgacttttctgtagtaaaagcaccacacatttatacacatcaatgaatcatgattatag |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |
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| T |
45195570 |
ccaaaaggatcttgatcatttctctaatacatgtttggacccgaattttctgtagtaaaagtaccacacatttatacatatcaatgaatcatgattatag |
45195471 |
T |
|
| Q |
201 |
ttggaatcaaatatcttcatag |
222 |
Q |
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|
|||||||||||||||||||||| |
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|
| T |
45195470 |
ttggaatcaaatatcttcatag |
45195449 |
T |
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