View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5581_low_14 (Length: 233)
Name: NF5581_low_14
Description: NF5581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5581_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 219
Target Start/End: Original strand, 2969957 - 2970157
Alignment:
| Q |
19 |
gtttttgcttccagcttcggaatgtgaattcgcccttaattcggtaatgtgcatgttggatagtttggttgtgtgttgatcaaagctgttagtggcacat |
118 |
Q |
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| T |
2969957 |
gtttttgcttccagcttcggaatgtgaattcgcccttaattcggtaatttgcatgttggatagtttggttgtgtgttgatcaaagttgttagtggcacat |
2970056 |
T |
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| Q |
119 |
tgcagttcaattccgctgctatagctgctatttaacaacactcacgtagtgttgttaaatagcaactatagcggtggtatcatgctattctgtagtataa |
218 |
Q |
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| T |
2970057 |
tgcagttcaattccgctgctatagctgctatttaacaacactcacgtagtgttgttaaatagcaactatagcggtggtatcatgctattctgtagtataa |
2970156 |
T |
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| Q |
219 |
t |
219 |
Q |
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| T |
2970157 |
t |
2970157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 190
Target Start/End: Complemental strand, 2970128 - 2970074
Alignment:
| Q |
136 |
gctatagctgctatttaacaacactcacgt-agtgttgttaaatagcaactatagc |
190 |
Q |
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| T |
2970128 |
gctatagttgctatttaacaacact-acgtgagtgttgttaaatagcagctatagc |
2970074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 160
Target Start/End: Original strand, 7573988 - 7574016
Alignment:
| Q |
132 |
cgctgctatagctgctatttaacaacact |
160 |
Q |
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| T |
7573988 |
cgctgctatagctgctatttaacaacact |
7574016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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