View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5581_low_2 (Length: 372)
Name: NF5581_low_2
Description: NF5581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5581_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 11 - 356
Target Start/End: Original strand, 49944680 - 49945025
Alignment:
| Q |
11 |
cagagataacaacagtgtaaacacataccctcatcnnnnnnntcccttctttccacaatggagtgaagaaaggagaaaagcgtgattctttattagtaca |
110 |
Q |
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| T |
49944680 |
cagagataacaacagtgtaaacacataccctcatcaaaaaaatcccttctttccacaatggagtgaagaaaggagaaaagcgtgattcttcattagtaca |
49944779 |
T |
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| Q |
111 |
tttcaacctagacccacttacggaaacatggtgtatcctcaacaagtttacattttgacaacaaaaactaaaaacttgccttattgggcgtccatgtttc |
210 |
Q |
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| T |
49944780 |
tttcaacctagacccacttacggaaacatggtgtatcctcaacaagtttacattttgacaacaaaaactaaaaacttgccttattgggcgtccatgtttc |
49944879 |
T |
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| Q |
211 |
gcagatacagtgcaccaccttttgcttttctgcaataatcttcttctctccaacaactccaaatgattgttactattgatagtgatagtgttgtaaactt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49944880 |
gcagatacagtgcaccaccttttgcttttctgcaataatcttcttctctccaacaactccaaatgattgttactattgatagtgatagtgttgtaaactt |
49944979 |
T |
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| Q |
311 |
tgaaagaagaatgaagcttgattccgaagaaagaggtgttcattat |
356 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49944980 |
tgaaagaagaatgaagcttgattccgaagaaagaggtgttcattat |
49945025 |
T |
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