View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5581_low_4 (Length: 342)

Name: NF5581_low_4
Description: NF5581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5581_low_4
NF5581_low_4
[»] chr1 (10 HSPs)
chr1 (1-164)||(15373957-15374121)
chr1 (1-171)||(46358496-46358664)
chr1 (6-164)||(4530800-4530957)
chr1 (64-165)||(15374646-15374746)
chr1 (270-311)||(46358665-46358706)
chr1 (64-156)||(46357885-46357976)
chr1 (63-165)||(45597623-45597725)
chr1 (115-165)||(51610220-51610270)
chr1 (124-164)||(3788435-3788475)
chr1 (121-165)||(4626345-4626389)
[»] chr3 (8 HSPs)
chr3 (1-163)||(51492342-51492504)
chr3 (1-165)||(42146799-42146962)
chr3 (13-131)||(44385128-44385245)
chr3 (64-164)||(42147497-42147596)
chr3 (65-164)||(51491709-51491807)
chr3 (116-165)||(46580363-46580412)
chr3 (63-164)||(53714487-53714588)
chr3 (124-164)||(50306531-50306571)
[»] chr7 (7 HSPs)
chr7 (1-164)||(9379680-9379843)
chr7 (13-165)||(37693458-37693609)
chr7 (30-165)||(36661684-36661819)
chr7 (110-165)||(9378728-9378783)
chr7 (39-98)||(30915799-30915858)
chr7 (11-156)||(34996885-34997033)
chr7 (50-98)||(30402788-30402836)
[»] scaffold0016 (2 HSPs)
scaffold0016 (1-150)||(67875-68024)
scaffold0016 (64-164)||(67247-67346)
[»] chr8 (3 HSPs)
chr8 (170-311)||(44458876-44459023)
chr8 (170-311)||(44466409-44466556)
chr8 (6-164)||(511334-511491)
[»] chr2 (3 HSPs)
chr2 (6-164)||(6198795-6198951)
chr2 (49-164)||(5504344-5504458)
chr2 (124-164)||(26021919-26021959)
[»] chr4 (6 HSPs)
chr4 (39-165)||(5825333-5825457)
chr4 (39-99)||(20350402-20350462)
chr4 (114-165)||(55879793-55879844)
chr4 (111-165)||(49708720-49708774)
chr4 (46-90)||(6680273-6680317)
chr4 (11-54)||(38321189-38321233)
[»] chr5 (1 HSPs)
chr5 (124-164)||(30002864-30002904)
[»] chr6 (1 HSPs)
chr6 (1-61)||(25371271-25371332)


Alignment Details
Target: chr1 (Bit Score: 145; Significance: 3e-76; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 15374121 - 15373957
Alignment:
Q  1 gtgggtgagtggggatggaggagagaaaagggtgtgggagatagtgtgaaaaaatctagtggtgagagactatgataaaactatgctcttcatttgattc 100  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  15374121 gtgggtgagtggggatggaggagagaaaaggatgtgggagatagtgtgaaaaaatctagtggtgagagactatgataaaactatgctcttcatttgatcc 15374022  T
Q  101 aaggattagaaatcaactttt-ccatggtgggaaaatatttccccatcccaccctaaatgccacc 164  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  15374021 aaggattagaaatcaacttttcccatggtgggaaaatctttccccatcccaccctaaatgccacc 15373957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 46358496 - 46358664
Alignment:
Q  1 gtgggtgagtggggatggaggagagaaaagggtgtgggagatagtgtgaaaaaatctagtggtgagagactatgataaaactatgctcttcatttgattc 100  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||     
T  46358496 gtgggtgagtggggatggaggaga--aaagggtgtgggagatagtgtgaaaaaatttagtggtgagagactatgataaaactatgctcttcatttgatta 46358593  T
Q  101 aaggattagaaatcaacttttccatggtgggaaaatatttccccatcccaccctaaatgccacctccgtag 171  Q
    |||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  46358594 aaggattagaaatcaactttcccatggtgggaaaatcttttcccatcccaccctaaatgccacctccgtag 46358664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 6 - 164
Target Start/End: Original strand, 4530800 - 4530957
Alignment:
Q  6 tgagtggggatggaggagagaaaagggtgtgggagatagtgtgaaaa-aatctagtggtgagagactatgataaaactatgctcttcatttgattcaagg 104  Q
    ||||| ||||||||||||||||  |||||||||| |||||||||||| |||||||||||||||| |||| |||||| |||| ||||||||||||  |||     
T  4530800 tgagttgggatggaggagagaa--gggtgtgggatatagtgtgaaaaaaatctagtggtgagagtctataataaaaatatggtcttcatttgatctaaga 4530897  T
Q  105 attagaaatcaacttttccatggtgggaaaatatttccccatcccaccctaaatgccacc 164  Q
     ||| ||||||||||| |||| ||||| || | ||||||   |||||||||||| |||||    
T  4530898 gttataaatcaactttcccattgtggggaattctttccctcacccaccctaaataccacc 4530957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 64 - 165
Target Start/End: Original strand, 15374646 - 15374746
Alignment:
Q  64 gagagactatgataaaactatgctcttcatttgattcaaggattagaaatcaacttttccatggtgggaaaatatttccccatcccaccctaaatgccac 163  Q
    ||||||||||||||||| | || |||| |||| || ||| |  || ||||||||||  ||||||||||||||| ||||||| ||||||||||||||||||    
T  15374646 gagagactatgataaaagtgtgttctttatttaatccaatggcta-aaatcaacttgcccatggtgggaaaatctttccccttcccaccctaaatgccac 15374744  T
Q  164 ct 165  Q
    ||    
T  15374745 ct 15374746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 270 - 311
Target Start/End: Original strand, 46358665 - 46358706
Alignment:
Q  270 tctcactcaccactttatgatggcgtttgcaagacatggcag 311  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  46358665 tctcactcaccactttatgatggcgtttgcaagacatggcag 46358706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 64 - 156
Target Start/End: Complemental strand, 46357976 - 46357885
Alignment:
Q  64 gagagactatgataaaactatgctcttcatttgattcaaggattagaaatcaacttttccatggtgggaaaatatttccccatcccaccctaa 156  Q
    ||||||||||||||||| | || |||| |||| || ||| || || ||||||||||  ||||||||| ||||||||||||| |||||||||||    
T  46357976 gagagactatgataaaagtgtgttctttatttaatccaatgacta-aaatcaacttgcccatggtggaaaaatatttccccttcccaccctaa 46357885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 165
Target Start/End: Complemental strand, 45597725 - 45597623
Alignment:
Q  63 tgagagactatgataaaactatgctcttcatttgattcaaggattagaaatcaacttttccatggtgggaaaatatttccccatcccaccctaaatgcca 162  Q
    |||||||||||||||| |||||| ||||  |||||| |||  |||| |||  | |||| | ||||||||||| | ||||||   ||||||||||||||||    
T  45597725 tgagagactatgataatactatggtctttctttgatccaaccattaaaaagtatctttcctatggtgggaaattctttccctcacccaccctaaatgcca 45597626  T
Q  163 cct 165  Q
    |||    
T  45597625 cct 45597623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 165
Target Start/End: Original strand, 51610220 - 51610270
Alignment:
Q  115 aacttttccatggtgggaaaatatttccccatcccaccctaaatgccacct 165  Q
    |||||| |||||||||||||||||| | ||  |||||||||||||||||||    
T  51610220 aactttcccatggtgggaaaatattcctcctacccaccctaaatgccacct 51610270  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 164
Target Start/End: Complemental strand, 3788475 - 3788435
Alignment:
Q  124 atggtgggaaaatatttccccatcccaccctaaatgccacc 164  Q
    ||||||||||| | ||||||| |||||||||||||||||||    
T  3788475 atggtgggaaactctttccccttcccaccctaaatgccacc 3788435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 165
Target Start/End: Original strand, 4626345 - 4626389
Alignment:
Q  121 tccatggtgggaaaatatttccccatcccaccctaaatgccacct 165  Q
    |||||||||||||| | ||||||  ||||||||||||||||||||    
T  4626345 tccatggtgggaaattttttccctctcccaccctaaatgccacct 4626389  T

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Target: chr3 (Bit Score: 143; Significance: 4e-75; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 51492342 - 51492504
Alignment:
Q  1 gtgggtgagtggggatggaggagagaaaagggtgtgggagatagtgtgaaaaaatctagtggtgagagactatgataaaactatgctcttcatttgattc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |    
T  51492342 gtgggtgagtggggatggaggagagaaaagggtgtgggagatagtgtgaaaaaatctagtggtgagagactatgataaaactatactcttcatttgatcc 51492441  T
Q  101 aaggattagaaatcaacttttccatggtgggaaaatatttccccatcccaccctaaatgccac 163  Q
    |||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||    
T  51492442 aaggattagaaatcaactttcccatggtgggaaaatctttctccatcccaccctaaatgccac 51492504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 42146962 - 42146799
Alignment:
Q  1 gtgggtgagtggggatggaggagagaaaagggtgtgggagatagtgtgaaaaaatctagtggtgagagactatgataaaactatgctcttcatttgattc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |    
T  42146962 gtgggtgagtggggatggaggagagaaaagggtgtgggagatagtgtgaaaaaatctagtggtgagagactatgataaaactatactcttcatttgatcc 42146863  T
Q  101 aaggattagaaatcaacttttccatggtgggaaaatatttccccatcccaccctaaatgccacct 165  Q
    |||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||    
T  42146862 aaggattagaaatcaactttcccatggtgggaaaatcttt-cccatcccaccctaaatgccacct 42146799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 13 - 131
Target Start/End: Original strand, 44385128 - 44385245
Alignment:
Q  13 ggatggaggagagaaaagggtgtgggagatagtgtgaaaa-aatctagtggtgagagactatgataaaactatgctcttcatttgattcaaggattagaa 111  Q
    |||||||||||||||  |||||||||| |||||||||||| |||||||||||||||| |||| ||||||||||| ||||||||||||  |||  ||| ||    
T  44385128 ggatggaggagagaa--gggtgtgggatatagtgtgaaaaaaatctagtggtgagagtctataataaaactatggtcttcatttgatctaagagttataa 44385225  T
Q  112 atcaacttttccatggtggg 131  Q
    ||||||||| |||| |||||    
T  44385226 atcaactttcccattgtggg 44385245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 64 - 164
Target Start/End: Original strand, 42147497 - 42147596
Alignment:
Q  64 gagagactatgataaaactatgctcttcatttgattcaaggattagaaatcaacttttccatggtgggaaaatatttccccatcccaccctaaatgccac 163  Q
    ||||||||||||||||| | || |||| |||| || ||| |  || ||||||||||  ||||||||||||||| ||||||| ||||||||||||||||||    
T  42147497 gagagactatgataaaagtgtgttctttatttaatccaatggcta-aaatcaacttgcccatggtgggaaaatctttccccttcccaccctaaatgccac 42147595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 65 - 164
Target Start/End: Complemental strand, 51491807 - 51491709
Alignment:
Q  65 agagactatgataaaactatgctcttcatttgattcaaggattagaaatcaacttttccatggtgggaaaatatttccccatcccaccctaaatgccacc 164  Q
    |||||||||||||||| | || |||| |||| || ||| |  || |||||||||| |||||||||| ||||| ||||||| ||||||||||||| |||||    
T  51491807 agagactatgataaaagtgtgttctttatttaatccaatggcta-aaatcaacttgtccatggtggaaaaatctttccccttcccaccctaaataccacc 51491709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 165
Target Start/End: Complemental strand, 46580412 - 46580363
Alignment:
Q  116 acttttccatggtgggaaaatatttccccatcccaccctaaatgccacct 165  Q
    ||||||||||||| ||||||| |||| ||  |||||||||||||||||||    
T  46580412 acttttccatggtaggaaaatctttctcctacccaccctaaatgccacct 46580363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 164
Target Start/End: Complemental strand, 53714588 - 53714487
Alignment:
Q  63 tgagagactatgataaaactatgctcttcatttgattcaaggattagaaatcaacttttccatggtgggaaaatatttccccatcccaccctaaatgcca 162  Q
    |||||||||||||||| |||||| ||||  |||||| |||   ||| |||  | |||| ||||||||||||| | ||||||   ||||||||||||||||    
T  53714588 tgagagactatgataatactatggtctttctttgatccaaccgttaaaaagtatctttcccatggtgggaaattctttccctcacccaccctaaatgcca 53714489  T
Q  163 cc 164  Q
    ||    
T  53714488 cc 53714487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 164
Target Start/End: Original strand, 50306531 - 50306571
Alignment:
Q  124 atggtgggaaaatatttccccatcccaccctaaatgccacc 164  Q
    ||||||||||| | ||||||| |||||||||||||||||||    
T  50306531 atggtgggaaactctttccccttcccaccctaaatgccacc 50306571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 140; Significance: 3e-73; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 9379680 - 9379843
Alignment:
Q  1 gtgggtgagtggggatggaggagagaaaagggtgtgggagatagtgtgaaaaaatctagtggtgagagactatgataaaactatgctcttcatttgattc 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  9379680 gtgggtgagtggggatggaggagagaaaatggtgtgggagatagtgtgaaaaaatctagtggtgagagactatgataaaactatgctcttcatttgatcc 9379779  T
Q  101 aaggattagaaatcaacttttccatggtgggaaaatatttccccatcccaccctaaatgccacc 164  Q
    |||||||||||||||||||| |||| |||| ||||| |||||||||||||||||||||||||||    
T  9379780 aaggattagaaatcaactttcccatagtggaaaaatctttccccatcccaccctaaatgccacc 9379843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 165
Target Start/End: Original strand, 37693458 - 37693609
Alignment:
Q  13 ggatggaggagagaaaagggtgtgggagatagtgtgaaaa-aatctagtggtgagagactatgataaaactatgctcttcatttgattcaaggattagaa 111  Q
    |||||||||||||||  |||||||||| |||||||||||| |||||||||||||||| |||| ||||||||||| ||||||||||||  |||  ||| ||    
T  37693458 ggatggaggagagaa--gggtgtgggatatagtgtgaaaaaaatctagtggtgagagtctataataaaactatggtcttcatttgatctaagagttataa 37693555  T
Q  112 atcaacttttccatggtgggaaaatatttccccatcccaccctaaatgccacct 165  Q
    ||||||||| |||| ||||| || | ||||||   |||||||||||| ||||||    
T  37693556 atcaactttcccattgtggggaattctttccctcacccaccctaaataccacct 37693609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 30 - 165
Target Start/End: Complemental strand, 36661819 - 36661684
Alignment:
Q  30 gggtgtgggagatagtgtgaaaaaatctagtggtgagagactatgataaaactatgctcttcatttgattcaaggattagaaatcaacttttccatggtg 129  Q
    |||||||| |||||||||||||||||||| ||||||||| |||| |||||| ||||||||||| |||||  || | | | |||   ||||| ||||||||    
T  36661819 gggtgtggaagatagtgtgaaaaaatctaatggtgagagtctataataaaattatgctcttcaattgatctaatggtcacaaaaatactttcccatggtg 36661720  T
Q  130 ggaaaatatttccccatcccaccctaaatgccacct 165  Q
    ||||| | ||||||   |||||||||||||||||||    
T  36661719 ggaaattctttccctcacccaccctaaatgccacct 36661684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 110 - 165
Target Start/End: Complemental strand, 9378783 - 9378728
Alignment:
Q  110 aaatcaacttttccatggtgggaaaatatttccccatcccaccctaaatgccacct 165  Q
    ||||||||||| ||||||||| ||||| ||||||| ||||||||||||||||||||    
T  9378783 aaatcaactttcccatggtggaaaaatctttccccttcccaccctaaatgccacct 9378728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 30915858 - 30915799
Alignment:
Q  39 agatagtgtgaaaaaatctagtggtgagagactatgataaaactatgctcttcatttgat 98  Q
    |||||||| | |||||| ||||| ||||||| |||||||||| |||| ||||||||||||    
T  30915858 agatagtggggaaaaatatagtgttgagagagtatgataaaagtatggtcttcatttgat 30915799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 156
Target Start/End: Complemental strand, 34997033 - 34996885
Alignment:
Q  11 ggggatggaggagagaaaagggtg-tgggagatagtgtgaa---aaaatctagtggtgagagactatgataaaactatgctcttcatttgattcaaggat 106  Q
    |||||||||||||||| || |||| ||||||||||||||||   ||||||||||| ||| || |||| |||||| |||| | ||||||| ||  || |||    
T  34997033 ggggatggaggagagagaatggtggtgggagatagtgtgaaaaaaaaatctagtgttgaaagtctattataaaattatgttattcatttaatctaatgat 34996934  T
Q  107 tagaaatcaacttttccatggtgggaaaatatttccccatcccaccctaa 156  Q
     | ||||| ||||| |||| |||||||| | |||| |  |||||||||||    
T  34996933 caaaaatc-actttcccatagtgggaaactctttctcattcccaccctaa 34996885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 30402788 - 30402836
Alignment:
Q  50 aaaaatctagtggtgagagactatgataaaactatgctcttcatttgat 98  Q
    |||||| ||||| ||||||| |||||||||| |||| ||||||||||||    
T  30402788 aaaaatatagtgttgagagagtatgataaaagtatggtcttcatttgat 30402836  T

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Target: scaffold0016 (Bit Score: 130; Significance: 3e-67; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 67875 - 68024
Alignment:
Q  1 gtgggtgagtggggatggaggagagaaaagggtgtgggagatagtgtgaaaaaatctagtggtgagagactatgataaaactatgctcttcatttgattc 100  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  67875 gtgggtgagtggggatggaggagagaaaaggatgtgggagatagtgtgaaaaaatctagtggtgagagactatgataaaactatgctcttcatttgatcc 67974  T
Q  101 aaggattagaaatcaacttttccatggtgggaaaatatttccccatccca 150  Q
    |||||||||||||||||||| ||| ||||||||||| |||||||||||||    
T  67975 aaggattagaaatcaactttcccaaggtgggaaaatctttccccatccca 68024  T

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Target: scaffold0016; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 64 - 164
Target Start/End: Complemental strand, 67346 - 67247
Alignment:
Q  64 gagagactatgataaaactatgctcttcatttgattcaaggattagaaatcaacttttccatggtgggaaaatatttccccatcccaccctaaatgccac 163  Q
    ||||||||||||||||| | || |||| |||| || ||| |  || ||||||||||  ||||||||||||||| ||||||| ||||||||||||||||||    
T  67346 gagagactatgataaaagtgtgttctttatttaatccaatggcta-aaatcaacttgcccatggtgggaaaatctttccccttcccaccctaaatgccac 67248  T

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Target: chr8 (Bit Score: 121; Significance: 6e-62; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 170 - 311
Target Start/End: Original strand, 44458876 - 44459023
Alignment:
Q  170 agcgaactgatcaagtactactaaagtggtgatagtgtaactgtg------aaagccaaacatcaaacaaaaacaatacctagccgcttgtccccattcg 263  Q
    |||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  44458876 agcgaactgatcaagtactactaaagtggtgatagtgtaactgtgaatgtgaaagccaaacatcaaacaaaaacaaaacctagccgcttgtccccattcg 44458975  T
Q  264 attctctctcactcaccactttatgatggcgtttgcaagacatggcag 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  44458976 attctctctcactcaccactttatgatggcgtttgcaagacatggcag 44459023  T

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Target: chr8; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 170 - 311
Target Start/End: Original strand, 44466409 - 44466556
Alignment:
Q  170 agcgaactgatcaagtactactaaagtggtgatagtgtaactgtg------aaagccaaacatcaaacaaaaacaatacctagccgcttgtccccattcg 263  Q
    |||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  44466409 agcgaactgatcaagtactactaaagtggtgatagtgtaactgtgaatgtgaaagccaaacatcaaacaaaaacaaaacctagccgcttgtccccattcg 44466508  T
Q  264 attctctctcactcaccactttatgatggcgtttgcaagacatggcag 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  44466509 attctctctcactcaccactttatgatggcgtttgcaagacatggcag 44466556  T

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Target: chr8; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 6 - 164
Target Start/End: Original strand, 511334 - 511491
Alignment:
Q  6 tgagtggggatggaggagagaaaagggtgtgggagatagtgtgaaaa-aatctagtggtgagagactatgataaaactatgctcttcatttgattcaagg 104  Q
    ||||| ||||||||||||||||  ||||||||||||||||||||||| |||||||||||||||| |||| |||||| ||||||||||||||||| ||| |    
T  511334 tgagttgggatggaggagagaa--gggtgtgggagatagtgtgaaaaaaatctagtggtgagagcctataataaaattatgctcttcatttgatccaaag 511431  T
Q  105 attagaaatcaacttttccatggtgggaaaatatttccccatcccaccctaaatgccacc 164  Q
     ||| ||||||||||| | ||| ||||||| | |||||    ||||||||||||||||||    
T  511432 gttataaatcaactttcctatgatgggaaattctttccttcacccaccctaaatgccacc 511491  T

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Target: chr2 (Bit Score: 76; Significance: 4e-35; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 6 - 164
Target Start/End: Original strand, 6198795 - 6198951
Alignment:
Q  6 tgagtggggatggaggagagaaaagggtgtgggagatagtgtgaaaaaatctagtggtgagagactatgataaaactatgctcttcatttgattcaagga 105  Q
    ||||| ||||||||||||||||  |||||||||||||||||| |||||||||||||||||||| |||| |||||| ||||||||| ||||||| ||| |     
T  6198795 tgagttgggatggaggagagaa--gggtgtgggagatagtgtaaaaaaatctagtggtgagagcctataataaaattatgctctttatttgatccaaagg 6198892  T
Q  106 ttagaaatcaacttttccatggtgggaaaatatttccccatcccaccctaaatgccacc 164  Q
    ||| ||||||||||| | ||| ||||||| | ||||||   ||||||||||||||||||    
T  6198893 ttataaatcaactttcctatgatgggaaattctttccctcacccaccctaaatgccacc 6198951  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 49 - 164
Target Start/End: Complemental strand, 5504458 - 5504344
Alignment:
Q  49 aaaaaatctagtggtgagagactatgataaaactatgctcttcatttgattcaaggattagaaatcaacttttccatggtgggaaaatatttccccatcc 148  Q
    ||||||||||||| ||| |  |||| |||||| |||| | ||||||||||  || | | | |||||| |||||| || |||||||| | ||||||| |||    
T  5504458 aaaaaatctagtgttgaaaatctattataaaattatgttattcatttgatctaatggtcaaaaatca-cttttctatagtgggaaactctttccccttcc 5504360  T
Q  149 caccctaaatgccacc 164  Q
    ||||||||||||||||    
T  5504359 caccctaaatgccacc 5504344  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 164
Target Start/End: Original strand, 26021919 - 26021959
Alignment:
Q  124 atggtgggaaaatatttccccatcccaccctaaatgccacc 164  Q
    ||||||||||| | ||||||| |||||||||||||||||||    
T  26021919 atggtgggaaactctttccccttcccaccctaaatgccacc 26021959  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 165
Target Start/End: Complemental strand, 5825457 - 5825333
Alignment:
Q  39 agatagtgtgaaaaaatctagtggtgagagactatgataaaactatgctcttcatttgattcaaggattagaaatcaacttttccatggtgggaaaatat 138  Q
    ||||||||| ||||||||||||| ||||||| || ||||| | | || || |||||||||  || | |||||||  |||||| | ||||||||||| | |    
T  5825457 agatagtgt-aaaaaatctagtgttgagagagtaggataataatgtgttcctcatttgatctaatggttagaaaa-aactttgctatggtgggaaactct 5825360  T
Q  139 ttccccatcccaccctaaatgccacct 165  Q
    |||||  ||||||||||||||||||||    
T  5825359 ttcccattcccaccctaaatgccacct 5825333  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 20350462 - 20350402
Alignment:
Q  39 agatagtgtgaaaaaatctagtggtgagagactatgataaaactatgctcttcatttgatt 99  Q
    |||||||| | |||||| ||||| ||||||| |||||||||| |||| |||||||||||||    
T  20350462 agatagtggggaaaaatatagtgttgagagagtatgataaaagtatgatcttcatttgatt 20350402  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 114 - 165
Target Start/End: Complemental strand, 55879844 - 55879793
Alignment:
Q  114 caacttttccatggtgggaaaatatttccccatcccaccctaaatgccacct 165  Q
    ||||||| ||||||||||||| ||||||||   |||||||||||||||||||    
T  55879844 caactttcccatggtgggaaattatttccctcacccaccctaaatgccacct 55879793  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 165
Target Start/End: Original strand, 49708720 - 49708774
Alignment:
Q  111 aatcaacttttccatggtgggaaaatatttccccatcccaccctaaatgccacct 165  Q
    |||| ||||||||||||||||||| | ||||||   |||||||||||||||||||    
T  49708720 aatctacttttccatggtgggaaattctttccctcacccaccctaaatgccacct 49708774  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 90
Target Start/End: Original strand, 6680273 - 6680317
Alignment:
Q  46 gtgaaaaaatctagtggtgagagactatgataaaactatgctctt 90  Q
    |||||||||||||||| |||||  |||||||||||||||| ||||    
T  6680273 gtgaaaaaatctagtgttgagaatctatgataaaactatgttctt 6680317  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 54
Target Start/End: Original strand, 38321189 - 38321233
Alignment:
Q  11 ggggatggaggagagaaaagggtg-tgggagatagtgtgaaaaaa 54  Q
    |||||||||||||||| || |||| ||||||||||||||||||||    
T  38321189 ggggatggaggagagagaatggtggtgggagatagtgtgaaaaaa 38321233  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 164
Target Start/End: Complemental strand, 30002904 - 30002864
Alignment:
Q  124 atggtgggaaaatatttccccatcccaccctaaatgccacc 164  Q
    ||||||||||||| ||||||| |||||||||||||||||||    
T  30002904 atggtgggaaaatctttccccttcccaccctaaatgccacc 30002864  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 25371332 - 25371271
Alignment:
Q  1 gtgggtgagtggggatggaggagagaaaagggtg-tgggagatagtgtgaaaaaatctagtg 61  Q
    |||||||||| |||||||| |||||| || | || || ||||||||||||||||||||||||    
T  25371332 gtgggtgagtagggatggaagagagagaatgatggtgagagatagtgtgaaaaaatctagtg 25371271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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