View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5581_low_7 (Length: 326)
Name: NF5581_low_7
Description: NF5581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5581_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 167; Significance: 2e-89; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 99 - 309
Target Start/End: Original strand, 1449698 - 1449908
Alignment:
| Q |
99 |
aaaagatcaaaacgcaaaccaagacaatttcatatggctgaagaaagagaagataatacacaatttaacatggttgaggaaaaagaagagaacacacaat |
198 |
Q |
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| T |
1449698 |
aaaagatcaaaacgcaaaccaagacaatttcatatggctgaagaaaaagaagagaatacacaatttaacatggttgaggaaaaagaagagaacacacaat |
1449797 |
T |
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| Q |
199 |
ttaatgtggccggagnnnnnnnngataatacacaattaaatttagtgtatagtgatttggatatagaagtagctgaaacactaagtgttatttgtaagaa |
298 |
Q |
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| T |
1449798 |
ttaatgtggctggagaaaaaaaagataatacacaattaaatttagtgtatagtgatttggatatagaagttgctgaaacactaagtgttatttgtaagaa |
1449897 |
T |
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| Q |
299 |
agattggaatc |
309 |
Q |
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||| ||||||| |
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| T |
1449898 |
agaatggaatc |
1449908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 99 - 307
Target Start/End: Original strand, 1427493 - 1427701
Alignment:
| Q |
99 |
aaaagatcaaaacgcaaaccaagacaatttcatatggctgaagaaagagaagataatacacaatttaacatggttgaggaaaaagaagagaacacacaat |
198 |
Q |
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| T |
1427493 |
aaaagatcaaaacgcaaaccaaggcaatttcatatggctgaagatagagaagagaatacacaatttaacatggctgaagaaaaagaagagaacacacaat |
1427592 |
T |
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| Q |
199 |
ttaatgtggccggagnnnnnnnngataatacacaattaaatttagtgtatagtgatttggatatagaagtagctgaaacactaagtgttatttgtaagaa |
298 |
Q |
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| T |
1427593 |
ttaatatggatgaagaaaaagaagataatacacaattacaatcggtgtatagtgatttggatatagaagctgctgaaacattaggtgttattcttaagaa |
1427692 |
T |
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| Q |
299 |
agattggaa |
307 |
Q |
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| T |
1427693 |
agaatggaa |
1427701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 9 - 108
Target Start/End: Complemental strand, 1445544 - 1445445
Alignment:
| Q |
9 |
caagaatatggtcagagaatatagaacagaacattaactacacaagaaattaacacaggtgaaaattcattcaactcagcttggaattgcaaaagatcaa |
108 |
Q |
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| T |
1445544 |
caagaaaatggtcagagaatatagaacagaacattaactacacaagaaattaacacaggtgaaaattcattcaactcagcttggaattgcaaaagatcaa |
1445445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 99 - 199
Target Start/End: Original strand, 1472620 - 1472720
Alignment:
| Q |
99 |
aaaagatcaaaacgcaaaccaagacaatttcatatggctgaagaaagagaagataatacacaatttaacatggttgaggaaaaagaagagaacacacaat |
198 |
Q |
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| T |
1472620 |
aaaagatcaaaacgcaaaccaagacagtttcatatggctgaagaaagagaagagaacacacaatttaacatggctgaagaaaaagaagataatacacaat |
1472719 |
T |
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| Q |
199 |
t |
199 |
Q |
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| T |
1472720 |
t |
1472720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 168 - 307
Target Start/End: Original strand, 1472653 - 1472792
Alignment:
| Q |
168 |
atggttgaggaaaaagaagagaacacacaatttaatgtggccggagnnnnnnnngataatacacaattaaatttagtgtatagtgatttggatatagaag |
267 |
Q |
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|||| ||| |||| ||||||||||||||||||||| |||| | || ||||||||||||||| | | ||||||||||||||||||||||||| |
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| T |
1472653 |
atggctgaagaaagagaagagaacacacaatttaacatggctgaagaaaaagaagataatacacaattacaatcggtgtatagtgatttggatatagaag |
1472752 |
T |
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| Q |
268 |
tagctgaaacactaagtgttatttgtaagaaagattggaa |
307 |
Q |
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| T |
1472753 |
ctgctgaaacactaggtgttattcttaagaaagaatggaa |
1472792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 278
Target Start/End: Original strand, 1491556 - 1491610
Alignment:
| Q |
224 |
taatacacaattaaatttagtgtatagtgatttggatatagaagtagctgaaaca |
278 |
Q |
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| T |
1491556 |
taatacacaaattaaattagtgtatagtgatttggatacagaagctgctgaaaca |
1491610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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