View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5581_low_9 (Length: 323)
Name: NF5581_low_9
Description: NF5581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5581_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 54218218 - 54218536
Alignment:
| Q |
1 |
ttttgatgcatggcaaagatccagggagaagtattgcaaaagctggtatcaaagggaattattgaagttatctaagagaatcttggggccaaaccaagat |
100 |
Q |
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| T |
54218218 |
ttttgatgcatggcaaagatccagggagaagtattgcaaaatctggtatcaaagggaattattgaagttatctaagagaatcttggggccaaaccaagat |
54218317 |
T |
|
| Q |
101 |
acatgatgcaagaaggggcgttatacatgtaaaaccattgatgattcaattttgattaaaggactttcattcctctacaaatggaatcaagcagaatgtg |
200 |
Q |
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| T |
54218318 |
acatgatgcgagaaggggcgttatacatgtaaaaccattgatgattcaattttgattaaaggactttcattcctctacaaatggaatcaagcagaatgtg |
54218417 |
T |
|
| Q |
201 |
caaaccatctttaataacattagttggttgcttggtaatgaagatacgatcaagtttttgatctgcgttccttacaataacttgacattcctcgtaggac |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
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| T |
54218418 |
caaaccatctttaataacattagttggttgcttggtaatgaagatacgatcaagtttttgatctgtgttccttacaataacttgacattcttcgtaggac |
54218517 |
T |
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| Q |
301 |
aactagctacatatatatt |
319 |
Q |
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||||||||||||||||||| |
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| T |
54218518 |
aactagctacatatatatt |
54218536 |
T |
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