View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5582-Insertion-2 (Length: 815)
Name: NF5582-Insertion-2
Description: NF5582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5582-Insertion-2 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 729; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 729; E-Value: 0
Query Start/End: Original strand, 7 - 815
Target Start/End: Original strand, 31549439 - 31550245
Alignment:
| Q |
7 |
ataaacttcactagcaagatcatctttctgctttgtggcctcttcttgagaagactattaaatgaaccgagttcaataacttaggtcacaagaaattgta |
106 |
Q |
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| T |
31549439 |
ataaacttcactagcaagatcatctttctgctttgtggcctcttcttgagaagactattaaatgaaccaagttcaataacttaggtcacaagaaattgta |
31549538 |
T |
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| Q |
107 |
ttgaacaaaatattatatacaatttgaatcatcttcaaagtatatcatattcaacgtagttaacattatcttcgtctaaacattcgcagaagaagataaa |
206 |
Q |
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| T |
31549539 |
ttgaacaaaatattatatacaatttgaatcatcttcaaagtatatcatattcaacgtagttaacattatcttcgtctaaacattcgcagaagaagataaa |
31549638 |
T |
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| Q |
207 |
gaatgagtaaatcttagcctattctaacttgaattccagttgaaaagaatcacatgtgaaagcagaacttacaatggataaagtaagttgaccctttagc |
306 |
Q |
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| T |
31549639 |
gaatgagtaaatcttagcctattctaacttgaattccagttgaaaagaatcacatgtgaaagcagaacttacaatggataaagtaagttgaccctttagc |
31549738 |
T |
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| Q |
307 |
atggcgatgttctcctctgcagtagccttctctttctctacacgtttgagttcatcttcaactgatgaaagctcagtatgaagttttccattgtactgtt |
406 |
Q |
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| T |
31549739 |
atggcgatgttctcctctgcagtagccttctctttctctacacgtttgagttcatcttcaactgatgaaagctcagtatgaagttttccattgtactgtt |
31549838 |
T |
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| Q |
407 |
gtaaacttgttatgtattcttgtaaccgcttatacatttcattgagcgaggatatctgcagaaatccatcaatgaagacaataattaatattagtttaat |
506 |
Q |
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| T |
31549839 |
gtaaacttgttatgtattcttgtaaccgcttatacatttcattgagcgaggatatctgcagaaatccatcaatgaagacaataattaatattagtttaat |
31549938 |
T |
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| Q |
507 |
tcctgcaatgattggaagaagnnnnnnnnggtggaaaggagttcattgaactagaattatactgttattttaccttctgatttgcactttgaatctctcg |
606 |
Q |
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| T |
31549939 |
tcctgcaatgattggaagaagaaaaaaaaggtggaaaggagttcattgaactagaattatactgttattttaccttctgatttgcactttgaatctctcg |
31550038 |
T |
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| Q |
607 |
ttcagcttttccgaggtcctcggaaagagtagtatgtgacctctcaatatccagccttgcttctctctctttagaaagagattccactgcagccttgtgt |
706 |
Q |
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| T |
31550039 |
ttcagcttttccgaggtcctcggaaagagtagtatgtgacctctcaatatccagccttgcttctctctctttagaaagagattccactgcagccttgtgt |
31550138 |
T |
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| Q |
707 |
ttacaaagatattttcatagcttattatgattgacatttgctttcannnnnnnnnnnnnccaaaatttaaaaggcaaaaaagacttcaaaatatttctta |
806 |
Q |
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| T |
31550139 |
ttacaaagatattttcaaagcttattatgattgacatttcctttca--tttttttttttccaaaatttaaaaggcaaaaaagacttcaaaatatttctta |
31550236 |
T |
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| Q |
807 |
ccgacttct |
815 |
Q |
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| T |
31550237 |
ccgacttct |
31550245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 334 - 452
Target Start/End: Complemental strand, 34649621 - 34649503
Alignment:
| Q |
334 |
ttctctttctctacacgtttgagttcatcttcaactgatgaaagctcagtatgaagttttccattgtactgttgtaaacttgttatgtattcttgtaacc |
433 |
Q |
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| T |
34649621 |
ttctctttctctacacgcttgagatcaccttccactgtagaaagttcagaatgaagttttccattgtactgctgcaagcttgttatatactcttgtaatc |
34649522 |
T |
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| Q |
434 |
gcttatacatttcattgag |
452 |
Q |
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| T |
34649521 |
gcttatacatgtcattgag |
34649503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 571 - 717
Target Start/End: Complemental strand, 34649305 - 34649159
Alignment:
| Q |
571 |
ttattttaccttctgatttgcactttgaatctctcgttcagcttttccgaggtcctcggaaagagtagtatgtgacctctcaatatccagccttgcttct |
670 |
Q |
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||||| |||||||||||||||| ||| || ||| |||| |||| | ||||| || || || || || || || ||||| |||| || ||||| || ||| |
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| T |
34649305 |
ttattataccttctgatttgcagtttcaagctcacgttgagctctaccgagatcttctgatagtgttgtctgcgacctttcaaagtcaagcctagcctct |
34649206 |
T |
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| Q |
671 |
ctctctttagaaagagattccactgcagccttgtgtttacaaagata |
717 |
Q |
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| T |
34649205 |
ctttctttaataagagattccattgcagccttgtgtttcaaaagata |
34649159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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