View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5582-Insertion-3 (Length: 800)
Name: NF5582-Insertion-3
Description: NF5582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5582-Insertion-3 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 777; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 777; E-Value: 0
Query Start/End: Original strand, 8 - 800
Target Start/End: Complemental strand, 44011568 - 44010777
Alignment:
| Q |
8 |
tgattctctgtgtattttgctgcagattgggcacttagcaaagggagttaatccaccatcagtaaacctgttatacttcaatggtccttacttggctctt |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44011568 |
tgattctctgtgtattttgctgcagattgggcacttagcaaagggagttaatccaccatcagtaaacctgttatacttcaatggtccttacttggctctt |
44011469 |
T |
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| Q |
108 |
gctatcaaaacaggcattgtcacaggaatcctatctctcacagtaagcagaatcaaaacttgctacacttttctgtcacatattacatgttacatactta |
207 |
Q |
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| T |
44011468 |
gctatcaaaacaggcattgtcacaggaatcctatctctcacagtaagcagaatcaaaacttgctacacttttctgtcacatattacatgttacatactta |
44011369 |
T |
|
| Q |
208 |
aaaataatacaaaacttaggtcctactcaatggatactatccgtgttgttccccaattataatttgtcacgcggtttaaatttttcaattaaatttaaac |
307 |
Q |
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| T |
44011368 |
aaaataatacaaaacttaggtcctactcaatggatactatccgtgttgttccccaattataatttgtcacgcggtttaaatttttcaattaaatttaaac |
44011269 |
T |
|
| Q |
308 |
ttaaaccgattcagtttatactattacatacacggtccatgtgttgaattgtaattagataacagtaaaaacagtgcacaaagaactgatctagattttg |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44011268 |
ttaaaccgattcagtttatactattacatacacggtccatgtgttgaattgtaattagataacagtaaaaacagtgcacaaagaactgatctagattttg |
44011169 |
T |
|
| Q |
408 |
tacttaaatatagcatgatgttgttttacttaactgcgactcatattccacaaaatttaccaatgtttcaggaaggaattgcagtaggtagaacatttgc |
507 |
Q |
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| T |
44011168 |
tacttaaatatagcatgatgttgttttacttaactgcgactcatattccacaacatttaccaatgtttcaggaaggaattgcagtaggtagaacatttgc |
44011069 |
T |
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| Q |
508 |
agcacttaagaattaccaagtggatggaaacaaagaaatgatggctattggtattatgaacatagctggatcttgtacttcatgctatgtcacaacaggt |
607 |
Q |
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| T |
44011068 |
agcacttaagaattaccaagtggatggaaacaaagaaatgatggctattggtattatgaacatagctggatcttgtacttcatgctatgtcacaacaggt |
44010969 |
T |
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| Q |
608 |
aataactcttcttcttttatttatccacatgactttagttatctaagaagcatcaattttgagaaagtttacattcttgcaggatccttttctcggtcgg |
707 |
Q |
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| T |
44010968 |
aataactcttcttcttttatttatccacatgac-ttagttatctaagaagcatcaattttgagaaagtctacattcttgcaggatccttttctcggtcgg |
44010870 |
T |
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| Q |
708 |
ctgttaactacaatgctggagcacagacggcggtttctaatataatcatggcttcagctgttctagtgacccttttgtttctcatgcctctct |
800 |
Q |
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| T |
44010869 |
ctgttaactacaatgctggagcacagacggcggtttctaatataatcatggcttcagctgttctagtgacccttttgtttctcatgcctctct |
44010777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 2e-45; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 473 - 606
Target Start/End: Original strand, 3176309 - 3176442
Alignment:
| Q |
473 |
tttcaggaaggaattgcagtaggtagaacatttgcagcacttaagaattaccaagtggatggaaacaaagaaatgatggctattggtattatgaacatag |
572 |
Q |
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| T |
3176309 |
tttcaggaaggaattgcagttggaagaacatttgcttcacttcagaactaccaagtggatggaaacaaagaaatgatggctattggtcttatgaacatag |
3176408 |
T |
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| Q |
573 |
ctggatcttgtacttcatgctatgtcacaacagg |
606 |
Q |
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| T |
3176409 |
ctggctcttgttcttcatgttatgtcacaacagg |
3176442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 682 - 795
Target Start/End: Original strand, 3176522 - 3176635
Alignment:
| Q |
682 |
tcttgcaggatccttttctcggtcggctgttaactacaatgctggagcacagacggcggtttctaatataatcatggcttcagctgttctagtgaccctt |
781 |
Q |
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||||||||||||||||||||| || || |||||||||||||||||||||||||| || || || |||||||||||||| ||||| ||||| ||||| ||| |
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| T |
3176522 |
tcttgcaggatccttttctcgatcagccgttaactacaatgctggagcacagacagcagtatcaaatataatcatggcatcagcagttcttgtgacactt |
3176621 |
T |
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| Q |
782 |
ttgtttctcatgcc |
795 |
Q |
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| T |
3176622 |
ctgtttctcatgcc |
3176635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 46 - 155
Target Start/End: Original strand, 3175753 - 3175862
Alignment:
| Q |
46 |
caaagggagttaatccaccatcagtaaacctgttatacttcaatggtccttacttggctcttgctatcaaaacaggcattgtcacaggaatcctatctct |
145 |
Q |
| |
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|||||||| |||||||||||||| |||| |||||||||||| |||||| | |||||||||||||||||||| || ||||||| |||||| | ||||| |
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| T |
3175753 |
caaagggacttaatccaccatcatcaaacatgttatacttcagtggtccacatttggctcttgctatcaaaactggacttgtcactggaatcttgtctct |
3175852 |
T |
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| Q |
146 |
cacagtaagc |
155 |
Q |
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||| |||||| |
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| T |
3175853 |
cactgtaagc |
3175862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 476 - 607
Target Start/End: Original strand, 32958145 - 32958276
Alignment:
| Q |
476 |
caggaaggaattgcagtaggtagaacatttgcagcacttaagaattaccaagtggatggaaacaaagaaatgatggctattggtattatgaacatagctg |
575 |
Q |
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|||||||| ||||||||||| || ||||||||||| ||| || || ||||||||||||| || ||||||||||| ||||| |||||| | | || |
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| T |
32958145 |
caggaaggtattgcagtaggaaggacatttgcagctcttggaaactataaagtggatggaaataaggaaatgatggcaattgggtgtatgaatgtggttg |
32958244 |
T |
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| Q |
576 |
gatcttgtacttcatgctatgtcacaacaggt |
607 |
Q |
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| T |
32958245 |
gatccttcacttcctgctatgttacaacaggt |
32958276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 476 - 607
Target Start/End: Original strand, 32967558 - 32967689
Alignment:
| Q |
476 |
caggaaggaattgcagtaggtagaacatttgcagcacttaagaattaccaagtggatggaaacaaagaaatgatggctattggtattatgaacatagctg |
575 |
Q |
| |
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||||||||||||||||| || |||||||||||||| | | || ||| |||| |||||||| || ||||||||||| ||||| | ||||| | | || |
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| T |
32967558 |
caggaaggaattgcagttgggagaacatttgcagctataagaaactacaaagttgatggaaataaggaaatgatggcaattgggttcatgaatgtggttg |
32967657 |
T |
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| Q |
576 |
gatcttgtacttcatgctatgtcacaacaggt |
607 |
Q |
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| T |
32967658 |
gatctacaacatcatgctatgttacaacaggt |
32967689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 22377074 - 22377006
Alignment:
| Q |
16 |
tgtgtattttgctgcagattgggcacttagcaaagggagttaatccaccatcagtaaacctgttatact |
84 |
Q |
| |
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|||||||||| ||||||| || |||||| ||||| |||||||||||||||| |||||| ||||||||| |
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| T |
22377074 |
tgtgtattttcttgcagatcggccacttaacaaagtgagttaatccaccatcggtaaacatgttatact |
22377006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 30733951 - 30734019
Alignment:
| Q |
16 |
tgtgtattttgctgcagattgggcacttagcaaagggagttaatccaccatcagtaaacctgttatact |
84 |
Q |
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|||||||||| ||||||| || |||||| ||||| |||||||||||||||| |||||| ||||||||| |
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| T |
30733951 |
tgtgtattttcttgcagatcggccacttaacaaagtgagttaatccaccatcggtaaacatgttatact |
30734019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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