View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5582-Insertion-4 (Length: 530)
Name: NF5582-Insertion-4
Description: NF5582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5582-Insertion-4 |
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Alignment Details
Target: chr2 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 8 - 499
Target Start/End: Original strand, 4846314 - 4846789
Alignment:
| Q |
8 |
ggttctagacaaccttaaggcaaagaatatttatcattttagaaacttcttcatcgctataacctaatctgttaatccattattccgttttcaacaatgt |
107 |
Q |
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| T |
4846314 |
ggttctagacaaccttaaggcaaagaatatttatcattttagaaacttcttcatcgctataacctaatctgttaatccattattccgttgtcaacaatgt |
4846413 |
T |
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| Q |
108 |
taagtcacatgttacctacattagtactgaaataagttatattagtgtatgtaaggaaacagagtaaaacttatacatcagcnnnnnnnnnnnnntaata |
207 |
Q |
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| T |
4846414 |
taaggcacatgttacctacattagtactgaaataagttttattagtgtatgtaaggaaacagagtaaaacttatacatcagcaaaaataaaaaaataata |
4846513 |
T |
|
| Q |
208 |
aagaagcaattttttgttgaggatatggattatttcaaggctcacttgaaaggagggtttgattttgctcaatcggcagcaacataagagacaatagaag |
307 |
Q |
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| T |
4846514 |
aagaagcaattttttgttgaggatatggattatttcaaggctcacttgaaaggagggtttgattttgctcaataggcagcaacataagagacaatagaag |
4846613 |
T |
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| Q |
308 |
aatcagaagtcacctaaagcaaaagcaaccaaaagcaaaaaccacctaagccatgaatggaaatcagatagaaagaatcatttgaaagcaaaatagatat |
407 |
Q |
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| T |
4846614 |
aatcagaagtcacct----------------aaagcaaaaatcacctaagccatgaatggaaatcagatagaaagaatcatttgaaagcaaaatagatat |
4846697 |
T |
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| Q |
408 |
acacaaagacatttatatatggattattgataatagttgatatctggaaaattgataatagtatcaaaaagcattgatatatgataaatggt |
499 |
Q |
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| T |
4846698 |
acacaaagacatttatatatggattattgataatagttgatatctggaaaattgataatagtagcaaaaagcattgatatatggtaaatggt |
4846789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 8 - 422
Target Start/End: Complemental strand, 4080390 - 4079958
Alignment:
| Q |
8 |
ggttctagacaaccttaaggcaaagaatatttatcattttagaaacttcttcatcgctataacctaatctgttaatccattattccgttttcaacaatgt |
107 |
Q |
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| T |
4080390 |
ggttctagacaaccttaatgcaaagaatatttatcattttagaaacttcttcatcgctataacctaatttgttaatccattattccgttttcaacaatgt |
4080291 |
T |
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| Q |
108 |
taagtcacatgttacctacattagtactgaaataagttatattagtgtatgtaaggaaacagagtaaaacttatacatcagcnnnnnnnnnnnnntaata |
207 |
Q |
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| T |
4080290 |
taaggcacatgttacctacattagtactgaaataagttatattagtgtatgtaaggaaacagagtaaaacttatacatcagcaaaaataaaaaaataata |
4080191 |
T |
|
| Q |
208 |
aagaagcaattttttgttgaggatatggattatttc------------------aaggctcacttgaaaggagggtttgattttgctcaatcggcagcaa |
289 |
Q |
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| T |
4080190 |
aagaagcaattttttgttgaggatatggattatttcgaggatatggattatttcaaggctcacttgaaaggagggtttgattttgctcaataggcagcaa |
4080091 |
T |
|
| Q |
290 |
cataagagacaatagaagaatcagaagtcacctaaagcaaaagcaaccaaaagcaaaaaccacctaagccatgaatggaaatcagatagaaagaatcatt |
389 |
Q |
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| T |
4080090 |
cataagagacaatagaagaatcataagtcacctaaagcaaaagcaaccaaaagcaaaaatcacctaagccatgaatggaaatcagatagaaagaatcagt |
4079991 |
T |
|
| Q |
390 |
tgaaagcaaaatagatatacacaaagacattta |
422 |
Q |
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| T |
4079990 |
tgaaagcaaagtagatatacacaaagacattta |
4079958 |
T |
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