View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5582-Insertion-5 (Length: 435)
Name: NF5582-Insertion-5
Description: NF5582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5582-Insertion-5 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 384; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 4 - 435
Target Start/End: Complemental strand, 2102785 - 2102356
Alignment:
| Q |
4 |
aacattttcttcattgtgtcaataaacaaaatagtccaaatgagacaaagtgtataccctaggaacatgttcaacacggacagacttgaagttactcttc |
103 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
2102785 |
aacattttcttcattgtgtcaataaacaaaatagtccaaatgagacaaagtgtataccctaggaacatgttcaacacggacggacttgaagttactcttc |
2102686 |
T |
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| Q |
104 |
agctccacagcctcattgcacaggttccttaaatttggattgttgactttccaggaaccctcaaactgttgcaaacccaataaaaatatgatggtaaatt |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2102685 |
agctccacagcctcattgcacaggttccttaaatttggattgttgactttccaggaaccctcaaactgttgcaaacccaataaaaatatgatggtaaatt |
2102586 |
T |
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| Q |
204 |
cggattatcttttaatgttatcattattcaattcattcagatacaattttagtgataaagttataataaatgaagttaggttagtgcatacacattaagg |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||| |||||| ||||||| |||||||||| ||| | |
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| T |
2102585 |
cggattatcttttaatgttatcattattcaattcattcagatgcaatttaagtgat-aagttataatacatgaagataggttaatgcatacacagtaa-g |
2102488 |
T |
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| Q |
304 |
ggaactaacctgcttgcagacaagctgagagtcacctcggacatgaacatgctcatatccttggttgctagcttctttcagccccaaaattagaccatta |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2102487 |
ggaactaacctgcttgcagacaagctgagagtcacctcggacatgaacatgctcatatccttggttgctagcttctttcagccccaaaattagaccatta |
2102388 |
T |
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| Q |
404 |
tattcagcggaattatttgtttcaatgccgag |
435 |
Q |
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| T |
2102387 |
tattcagcggaattatttgtttgaatgccgag |
2102356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 100 - 186
Target Start/End: Complemental strand, 2054455 - 2054369
Alignment:
| Q |
100 |
cttcagctccacagcctcattgcacaggttccttaaatttggattgttgactttccaggaaccctcaaactgttgcaaacccaataa |
186 |
Q |
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|||||||| || |||||||||||||| ||||| ||||| | ||||||| |||||| |||||| ||||||||||||| ||||||| |
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| T |
2054455 |
cttcagctgcaaagcctcattgcacaagttccataaatactggttgttgattttccatgaacccagaaactgttgcaaaaccaataa |
2054369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 100 - 186
Target Start/End: Complemental strand, 2088661 - 2088575
Alignment:
| Q |
100 |
cttcagctccacagcctcattgcacaggttccttaaatttggattgttgactttccaggaaccctcaaactgttgcaaacccaataa |
186 |
Q |
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| T |
2088661 |
cttcagctccaaagcctcgttacataagctccttaaatttgcattgtagatgttacatgaacccttaaactgttgcaaaaccaataa |
2088575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 154; Significance: 2e-81; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 4 - 189
Target Start/End: Original strand, 39182902 - 39183087
Alignment:
| Q |
4 |
aacattttcttcattgtgtcaataaacaaaatagtccaaatgagacaaagtgtataccctaggaacatgttcaacacggacagacttgaagttactcttc |
103 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||| |
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| T |
39182902 |
aacattttcttcattgtgtcaacaaacaaaatagtccaaatgagacaaagtgtataccctaggaacatgttcgacactgactgacttgaagttactcttc |
39183001 |
T |
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| Q |
104 |
agctccacagcctcattgcacaggttccttaaatttggattgttgactttccaggaaccctcaaactgttgcaaacccaataaaaa |
189 |
Q |
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| T |
39183002 |
agctccacagcctcattacaaaggttccttaaatttgggttgttgactttccaggaaccctcaaactgttgcaaaaccaataaaaa |
39183087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 303 - 435
Target Start/End: Original strand, 39183543 - 39183675
Alignment:
| Q |
303 |
gggaactaacctgcttgcagacaagctgagagtcacctcggacatgaacatgctcatatccttggttgctagcttctttcagccccaaaattagaccatt |
402 |
Q |
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| T |
39183543 |
gggaactaacctgcttgcaaacaagctgagagtcacctcggacatgaacatgctcatatccttggttcctagcttcattcagccccaaaattagaccatt |
39183642 |
T |
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| Q |
403 |
atattcagcggaattatttgtttcaatgccgag |
435 |
Q |
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||||||||| ||||||||||||| | ||||||| |
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| T |
39183643 |
atattcagcagaattatttgtttgagtgccgag |
39183675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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