View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5582_high_1 (Length: 477)
Name: NF5582_high_1
Description: NF5582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5582_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 462
Target Start/End: Original strand, 31548982 - 31549445
Alignment:
| Q |
1 |
caattaacaacatgataatcgttataatggatacgttgaatagctatcctaagctgttacggttctaaatcctacaaaaa-cactagtggtttttatatc |
99 |
Q |
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|||||||||||| ||||||||| |||||| ||||||||||| | ||||||||||||||| |||||| |||| ||||||| ||| ||||||||||||||| |
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| T |
31548982 |
caattaacaacacgataatcgtaataatgaatacgttgaattacaatcctaagctgttacagttctatatccaacaaaaaacacaagtggtttttatatc |
31549081 |
T |
|
| Q |
100 |
caatagcatgcaacctttttataaaaagaatgtctttattacctgcaatttcttctctgcagatgctaacttttcttgtagtgcctttatttgattctct |
199 |
Q |
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|||||||||||||| ||||| | ||||||||||| | ||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||| |
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| T |
31549082 |
caatagcatgcaacatttttgtcaaaagaatgtcgtcattacctgcaatttcttctctgcagctgctaacttttcttgcaatgcctttatttgattctct |
31549181 |
T |
|
| Q |
200 |
ttcaacgaacttttttcctgtgaaagaaactcgtc-tatcatgactctaataataaaatagtgtgatatttaatagaaggatatcaggtatagaaaccaa |
298 |
Q |
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||||| |||||||||||||| |||||||||||||| | | |||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| |
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| T |
31549182 |
ttcaatgaacttttttcctgcgaaagaaactcgtcctgttatgactctaatagtaaaatagtgtaatattgaatagaaggatatcaggtatagaaaccaa |
31549281 |
T |
|
| Q |
299 |
cctccagttcatttgcttttaatgtcaagctgtccaattcaatgcaagagttctccctagattcttttagtttcatgaactcagcatctaaactttgtgc |
398 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
31549282 |
cctccagttcatttgcttttaatgtcaagctgtccaattcaatgcaagagttctccctagattcttttagtttcatgaactcagcatctaaactttgcgc |
31549381 |
T |
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| Q |
399 |
ttgagataattgacggtctctatcatctcttacttgtttcaactctcctctcatagaataaact |
462 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31549382 |
ttgagataattgacggtctctatcatctcttacttgtttcaactctcctctcatagaataaact |
31549445 |
T |
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