View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5582_high_13 (Length: 263)
Name: NF5582_high_13
Description: NF5582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5582_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 20 - 248
Target Start/End: Complemental strand, 8687420 - 8687192
Alignment:
| Q |
20 |
ccctggttatagaatgagcaagagggttgcgacgattaaggttaaggcgaagaatgttgcagaagtaactagtaatgcacttgctttgtttcaaagttat |
119 |
Q |
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| T |
8687420 |
ccctggtcatagaatgagcaaaagagttgcgacgattaaggtgaaggcgaagaatgttgcagaagtaactagtaatgcacttgctttgtttcaaagttat |
8687321 |
T |
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| Q |
120 |
gctacaaggtatcgacaagcagcggctagaaccgtcaagaagccatgaaaaactttaaatcataccttattttatcaccccttgtttgtccatgtatata |
219 |
Q |
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| T |
8687320 |
gctactaggtatcgacaagcagcggctagaaccgtcaagaagccatgaaaaacttgaaatcataccttattttatcaccccttgtttgtccatgtatata |
8687221 |
T |
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| Q |
220 |
cacatgttttctctttgggtggttttaca |
248 |
Q |
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|||||||||| |||||||||||||||||| |
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| T |
8687220 |
cacatgttttttctttgggtggttttaca |
8687192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 20 - 248
Target Start/End: Original strand, 8675046 - 8675281
Alignment:
| Q |
20 |
ccctggttatagaatgagcaagagggttgcgacgattaaggttaaggcgaagaatgttgcagaagtaactagtaatgcacttgctttgtttcaaagttat |
119 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8675046 |
ccctggtcatagaatgagcaagagggttgcgacgattaaggttaaggcgaagaatgttgcagaagtaactagtaatgcacttgctttgtttcaaagttat |
8675145 |
T |
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| Q |
120 |
gctacaaggtatcgacaagcag---cggctagaaccgtcaagaagccatgaaaaac-tttaaatcataccttattttatcaccccttgtttgtccatgta |
215 |
Q |
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| T |
8675146 |
gctacaaggtatcgacaagcagccacggctagaactgtcaagaagccatgaaaaacttttaaatcataacttattttatcaccccttgtttgtccatgta |
8675245 |
T |
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| Q |
216 |
t---atacacatgttttctctttgggtggttttaca |
248 |
Q |
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| T |
8675246 |
tatgatatacatgttttttcttcgggtggttttaca |
8675281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 20 - 248
Target Start/End: Original strand, 8693277 - 8693509
Alignment:
| Q |
20 |
ccctggttatagaatgagcaagagggttgcgacgattaaggttaaggcgaagaatgttgcagaagtaactagtaatgcacttgctttgtttcaaagttat |
119 |
Q |
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||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8693277 |
ccctggtcatagaatgagcaatagtgttgcgacgattaaggttaaggcgaagaatgttgcagaagtaactagtaatgcacttgctttgtttcaaagttat |
8693376 |
T |
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| Q |
120 |
gctacaaggtatcgacaagcag---cggctagaaccgtcaagaagccatgaaaaactttaaatcataccttattttatcaccccttgtttgtccatgtat |
216 |
Q |
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| T |
8693377 |
gctacaaggtatcgacaagcagccacggctagaacttcgaagaagccatgaaaaactttaaatcataccttattttgtcaccccttgtttgttcatgtat |
8693476 |
T |
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| Q |
217 |
at-acacatgttttctctttgggtggttttaca |
248 |
Q |
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|| | ||||||||| |||||||||||||||||| |
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| T |
8693477 |
atgatacatgttttttctttgggtggttttaca |
8693509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 20 - 245
Target Start/End: Complemental strand, 8695989 - 8695766
Alignment:
| Q |
20 |
ccctggttatagaatgagcaagagggttgcgacgattaaggttaaggcgaagaatgttgcagaagtaactagtaatgcacttgctttgtttcaaagttat |
119 |
Q |
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||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
8695989 |
ccctggtcatagaatgagcaagagggttgcgacgattaaggtgaaggcgaagaatgttgcagaagttactagtaacgcacttgctttgtttcaaagttat |
8695890 |
T |
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| Q |
120 |
gctacaaggtatcgacaagcagcggctagaaccgtcaagaagccatgaaaaactttaaatcataccttattttatcaccccttgtttgtccatgtatat- |
218 |
Q |
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||||||||||||||||||| ||| |||||||| |||||||||||||||| |||| |||||||| |||| |||||| |||||||||||||||||| |
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| T |
8695889 |
gctacaaggtatcgacaagaagcagctagaacttccaagaagccatgaaaatcttt-aatcatac---tttttgtcaccctttgtttgtccatgtatatg |
8695794 |
T |
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| Q |
219 |
acacat-gttttctctttgggtggtttt |
245 |
Q |
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| T |
8695793 |
atacatggttttttctttgggtggtttt |
8695766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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