View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5582_high_4 (Length: 393)
Name: NF5582_high_4
Description: NF5582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5582_high_4 |
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| [»] scaffold1738 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 17 - 301
Target Start/End: Complemental strand, 8411725 - 8411432
Alignment:
| Q |
17 |
gaacttgcctcaaaatcagcttcttgtcgcatggaaggtatcgaaatagatgaatttgccagcaagctcttctgagatattatttcttcaagagaataga |
116 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
8411725 |
gaacttgcctcaaaatcagcttcttgtcgcatggaaagtatcgaaatagatgaatttgccagcaagctcttctgagatattatttcttcaagacaataga |
8411626 |
T |
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| Q |
117 |
cattctttaattctttcataacatagaaagcaaatgtaaatatagattacagctatctgattctgcatataatttctaacttcatatataatgtaattga |
216 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
8411625 |
cattctttaattctttcataacatagaaaacaaatgtaaatatagattacagcgatctgattctgtatataatttttaacttcatatataatgtaattga |
8411526 |
T |
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| Q |
217 |
gtaggagaa--------atatatcttttcttccccaattttggttgaggcggagtaaagttga-annnnnnnagtaagaatgagggaaatgtac |
301 |
Q |
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||||||||| ||||||||||||||||||||||| | ||||| |||||||||||||| | |||||||||||||||||||||| |
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| T |
8411525 |
gtaggagaattcatgatatatatcttttcttccccaatttagcttgagtcggagtaaagttgagatttttttagtaagaatgagggaaatgtac |
8411432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 17 - 301
Target Start/End: Complemental strand, 8433823 - 8433530
Alignment:
| Q |
17 |
gaacttgcctcaaaatcagcttcttgtcgcatggaaggtatcgaaatagatgaatttgccagcaagctcttctgagatattatttcttcaagagaataga |
116 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
8433823 |
gaacttgcctcaaaatcagcttcttgtcgcatggaaagtatcgaaatagatgaatttgccagcaagctcttctgagatattatttcttcaagacaataga |
8433724 |
T |
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| Q |
117 |
cattctttaattctttcataacatagaaagcaaatgtaaatatagattacagctatctgattctgcatataatttctaacttcatatataatgtaattga |
216 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
8433723 |
cattctttaattctttcataacatagaaaacaaatgtaaatatagattacagcgatctgattctgtatataatttttaacttcatatataatgtaattga |
8433624 |
T |
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| Q |
217 |
gtaggagaa--------atatatcttttcttccccaattttggttgaggcggagtaaagttga-annnnnnnagtaagaatgagggaaatgtac |
301 |
Q |
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| T |
8433623 |
gtaggagaattcatgatatatatcttttcttccccaatttagcttgagtcggagtaaagttgagatttttttagtaagaatgagggaaatgtac |
8433530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 17 - 95
Target Start/End: Original strand, 8376281 - 8376359
Alignment:
| Q |
17 |
gaacttgcctcaaaatcagcttcttgtcgcatggaaggtatcgaaatagatgaatttgccagcaagctcttctgagata |
95 |
Q |
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| T |
8376281 |
gaacttgcctcaaaatcagcttcttgtcgcatggaaggtatcgaaattgatgaatttgccagcaagctattctgagata |
8376359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 17 - 95
Target Start/End: Complemental strand, 8416809 - 8416731
Alignment:
| Q |
17 |
gaacttgcctcaaaatcagcttcttgtcgcatggaaggtatcgaaatagatgaatttgccagcaagctcttctgagata |
95 |
Q |
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|||| |||| |||||||||||||||||||||| |||||| | || |||||||||||| |||||||||| |||||||||| |
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| T |
8416809 |
gaacgtgccacaaaatcagcttcttgtcgcatcgaaggtgttgacatagatgaattttccagcaagctattctgagata |
8416731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 8395967 - 8396031
Alignment:
| Q |
17 |
gaacttgcctcaaaatcagcttcttgtcgcatggaaggtatcgaaatagatgaatttgccagcaa |
81 |
Q |
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| T |
8395967 |
gaacttgcatcaaaatcagcttcttatcgcatggaaggtgttgacatagatgaatttgcaagcaa |
8396031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 8405605 - 8405541
Alignment:
| Q |
17 |
gaacttgcctcaaaatcagcttcttgtcgcatggaaggtatcgaaatagatgaatttgccagcaa |
81 |
Q |
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| T |
8405605 |
gaacttgcatcaaaatcagcttcttatcgcatggaaggtgttgacatagatgaatttgcaagcaa |
8405541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 8430876 - 8430812
Alignment:
| Q |
17 |
gaacttgcctcaaaatcagcttcttgtcgcatggaaggtatcgaaatagatgaatttgccagcaa |
81 |
Q |
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| T |
8430876 |
gaacttgcatcaaaatcagcttcttatcgcatggaaggtgttgacatagatgaattttccagcaa |
8430812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 137 - 201
Target Start/End: Original strand, 8376455 - 8376521
Alignment:
| Q |
137 |
acatagaaagcaaatgtaaatatagattacagctatctgattctgc--atataatttctaacttcat |
201 |
Q |
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|||||||||||||||||||||||||| ||| |||||||| ||| ||||||||||||||||||| |
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| T |
8376455 |
acatagaaagcaaatgtaaatatagacaacatagatctgattttgcatatataatttctaacttcat |
8376521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1738 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold1738
Description:
Target: scaffold1738; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 17 - 95
Target Start/End: Original strand, 113 - 191
Alignment:
| Q |
17 |
gaacttgcctcaaaatcagcttcttgtcgcatggaaggtatcgaaatagatgaatttgccagcaagctcttctgagata |
95 |
Q |
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|||||||| ||||||||||||||||||||||| |||||| | || ||||||||||||||||||||| | |||||||||| |
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| T |
113 |
gaacttgcatcaaaatcagcttcttgtcgcatcgaaggtgttgacatagatgaatttgccagcaagttattctgagata |
191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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