View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5582_high_8 (Length: 304)
Name: NF5582_high_8
Description: NF5582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5582_high_8 |
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Alignment Details
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 25 - 289
Target Start/End: Complemental strand, 2103039 - 2102776
Alignment:
| Q |
25 |
catgggtttgtcaaaatcagatatcagatcttttattcaagagtagaactagtacctcatatttcaaattatacaagttttgcctattaaagcatatgga |
124 |
Q |
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| T |
2103039 |
catgggtttgtcaaaatcacaaatcagatcttttattcaagagtagaactagtacctcatatttcaaattatacaagttttgcctattaaagcatatgga |
2102940 |
T |
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| Q |
125 |
tcacatgagagagaggcatgcgaattaaaaaggcatttgaaaaattatgatcatacacaattctcaaatgttggtataattgttttcaagtttcaacctc |
224 |
Q |
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| T |
2102939 |
tcacatgagagagaggcatgcgaattaaaaaggcatttgaaaaaatatgatcatacacaattctcaaatgttggtctaattgttttcaagtttcaacctc |
2102840 |
T |
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| Q |
225 |
gacctttttagttttcccgagcaaagtacaatcaagagaggcaacaatttgacaaaacattttct |
289 |
Q |
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| T |
2102839 |
gacctttttagttttccagagcaaaacacaatcaagagaggcaacaatttgac-aaacattttct |
2102776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 51 - 194
Target Start/End: Original strand, 39182631 - 39182780
Alignment:
| Q |
51 |
gatcttttattcaagagtagaactagtacctcatatttcaaattatacaagttttgcctattaaagcatatggatcacatga------gagagaggcatg |
144 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| || | ||| ||||||||||| |
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| T |
39182631 |
gatcttttattcaagagtagaactagtacttcatatttcaaattatacaagtttttcctattaaagcatatgaatagcgtgacttatgtagagaggcatg |
39182730 |
T |
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| Q |
145 |
cgaattaaaaaggcatttgaaaaattatgatcatacacaattctcaaatg |
194 |
Q |
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| T |
39182731 |
cgaattaaaaaggcatttgaaaaagtatgatcataaacgattctcaaatg |
39182780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 280
Target Start/End: Original strand, 39182803 - 39182868
Alignment:
| Q |
215 |
tttcaacctcgacctttttagttttcccgagcaaagtacaatcaagagaggcaacaatttgacaaa |
280 |
Q |
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|||||||||| |||||||| ||||||| ||| || |||||||||||||| ||||||||||||| |
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| T |
39182803 |
tttcaacctcaacctttttggttttccagagaaacacacaatcaagagaggtgacaatttgacaaa |
39182868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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