View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5582_high_9 (Length: 295)
Name: NF5582_high_9
Description: NF5582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5582_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 18 - 277
Target Start/End: Original strand, 43093295 - 43093554
Alignment:
| Q |
18 |
acctgatagaatccaacagaattgaaacccagactcaaatttaacaacccaatcgagattccatttagaattccaaatcccatcactgctttctgctcaa |
117 |
Q |
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| T |
43093295 |
acctgatagaatccaacagaattgaaacccagactcaaatttaacaacccaatcgagattccatttagaattccaaatcccatcactgctttctgctcaa |
43093394 |
T |
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| Q |
118 |
aaggcttgtgctcgaaaaatttcatttttagtgccacatgaagagaacaaaatgtaacaagaagatgccaacttgtcaatgttgtagctgcatagaaatt |
217 |
Q |
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| T |
43093395 |
aaggcttgtgctcgaaaaatttcatttttagtgccacatgaagagaacaaaatgtaacaagaagatgccaacttgtcaatgttgtagctgcatagaaatt |
43093494 |
T |
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| Q |
218 |
caatgatgtccattaaaacttttgacgtctacatatttaagacaagtatggggaagcttt |
277 |
Q |
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| T |
43093495 |
caatgatgtccattaaaactttagacgtctacatatttaagacaagtatgaggaagcttt |
43093554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 24 - 210
Target Start/End: Original strand, 43085348 - 43085534
Alignment:
| Q |
24 |
tagaatccaacagaattgaaacccagactcaaatttaacaacccaatcgagattccatttagaattccaaatcccatcactgctttctgctcaaaaggct |
123 |
Q |
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| T |
43085348 |
tagaagccgacagaattgaaccctaggctcaaatttaaaagtccaattgagattccatttaaaatcccaaatccaactacggctttctgctcaaaagcct |
43085447 |
T |
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| Q |
124 |
tgtgctcgaaaaatttcatttttagtgccacatgaagagaacaaaatgtaacaagaagatgccaacttgtcaatgttgtagctgcat |
210 |
Q |
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| T |
43085448 |
tgtgctcgaagaatctcattttgagtgccaaatgaagggaacaaaatgtgacaagtagatgccagcttgtcagagttgtagctgcat |
43085534 |
T |
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