View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5582_low_1 (Length: 518)
Name: NF5582_low_1
Description: NF5582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5582_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 397; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 1 - 500
Target Start/End: Complemental strand, 44881776 - 44881256
Alignment:
| Q |
1 |
ttttgatttgatgatggattttgagatctgggttttatttgtatttgagttaaagtgtgaagtttgaannnnnnnngtaaattgagcttggtttttaggg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
44881776 |
ttttgatttgatgatggattttgagatctgggttttgtttgtatttgtgttaaagtgtgaagtttggattttttttgtaaattgagcttggtttttaggg |
44881677 |
T |
|
| Q |
101 |
tttttgatgtttggtaattgatccgtttctctgt---------------------actagaggtttgtcgcttggagaataaataatcaaatgttgcttc |
179 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
44881676 |
tttttgatgtttggtaattgatccgtttctctgtgaaggatacaacgagttttgtactagaggtttgttgcttggagaataaataatcaaatgttgcttc |
44881577 |
T |
|
| Q |
180 |
ttgctcatctgtacccaaaggaattcaatgcaattcaaattcagaagtctcttggagtatgtagccccacggctacatccacattgccctcacatcggta |
279 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44881576 |
ttgctcatctgcacccaaaggaattcaatgcaattcaaattcagaagtctcttggagtatgtagccccacggctacatccacattgccctcacatcggta |
44881477 |
T |
|
| Q |
280 |
acatttgttatgttatttacttttttggttgcaatggtgattatggatcatgataatgatgttgtatctttagggagtgtgatttatcatgccaatcttg |
379 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
44881476 |
acatttgttatgttatttacttttttggttgcaatggtgattatggatcatgataatgatgttgtatcttgagggagtgtgatttatcatgccaatcttg |
44881377 |
T |
|
| Q |
380 |
tcattggcttaattttacattctgcaattgtagttgatttgcctttgacaaatctttgatgtggctttatgttcttttacaattttcctgattaatctgg |
479 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44881376 |
tcattggcttaattttacattctgcaatagtagttgatttgcttttgacaaatctttgatgtggctttatgttcttttacaattttcctgattaatctgg |
44881277 |
T |
|
| Q |
480 |
ccagagcaataacgtttatca |
500 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
44881276 |
ccagagcaataacgtttatca |
44881256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 138 - 345
Target Start/End: Original strand, 22157511 - 22157714
Alignment:
| Q |
138 |
agaggtttgtcgcttggagaataaataatcaaatgttgcttcttgctcatctgtacccaaaggaattcaatgcaattcaaattcagaagtctcttggagt |
237 |
Q |
| |
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|||||||||| | |||||||||||| |||||| ||||||||||||||||||||| | |||| || || | | |||||| ||||||| || | |
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| T |
22157511 |
agaggtttgttgtttggagaataaacaatcaactgttgcttcttgctcatctgtgtctgaagg----cagtgatagtataattcaaaagtctccggggat |
22157606 |
T |
|
| Q |
238 |
atgtagccccacggctacatccacattgccctcacatcggtaacatttgttatgttatttacttttttggttgcaatggtgattatggatcatgataatg |
337 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| | || ||||||||| ||||| ||| |
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| T |
22157607 |
atgtagccccacggctacatccacatcgccctcacatcggtaatgtttgttatgttatttacttttttggttgcagttgtaattatggataatgatcatg |
22157706 |
T |
|
| Q |
338 |
atgttgta |
345 |
Q |
| |
|
||| |||| |
|
|
| T |
22157707 |
atggtgta |
22157714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 138 - 345
Target Start/End: Original strand, 22216219 - 22216422
Alignment:
| Q |
138 |
agaggtttgtcgcttggagaataaataatcaaatgttgcttcttgctcatctgtacccaaaggaattcaatgcaattcaaattcagaagtctcttggagt |
237 |
Q |
| |
|
|||||||||| | |||||||||||| |||||| ||||||||||||||||||||| | |||| || || | | |||||| ||||||| || | |
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|
| T |
22216219 |
agaggtttgttgtttggagaataaacaatcaactgttgcttcttgctcatctgtgtctgaagg----cagtgatagtataattcaaaagtctccggggat |
22216314 |
T |
|
| Q |
238 |
atgtagccccacggctacatccacattgccctcacatcggtaacatttgttatgttatttacttttttggttgcaatggtgattatggatcatgataatg |
337 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| | || ||||||||| ||||| ||| |
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|
| T |
22216315 |
atgtagccccacggctacatccacatcgccctcacatcggtaatgtttgttatgttatttacttttttggttgcagttgtaattatggataatgatcatg |
22216414 |
T |
|
| Q |
338 |
atgttgta |
345 |
Q |
| |
|
||| |||| |
|
|
| T |
22216415 |
atggtgta |
22216422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 22157337 - 22157458
Alignment:
| Q |
1 |
ttttgatttgatgatggattttgagatctgggttttatttgtatttgagttaaagtgtgaa-gtttgaannnnnnnngtaaattgagcttggtttttagg |
99 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||| ||||| |||| || |||||||||| ||||| | | |||||||| |||||||||||| |
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|
| T |
22157337 |
ttttgatttgattatagattttgagatctgggttttgtttgtgtttgtgtaaaagtgtgaaagtttggatttttttgg-aaattgaggttggtttttagg |
22157435 |
T |
|
| Q |
100 |
gtttttgatgtttggtaattgat |
122 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
22157436 |
gtttttgatgtttggtaattgat |
22157458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 22216045 - 22216166
Alignment:
| Q |
1 |
ttttgatttgatgatggattttgagatctgggttttatttgtatttgagttaaagtgtgaa-gtttgaannnnnnnngtaaattgagcttggtttttagg |
99 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||| ||||| |||| || |||||||||| ||||| | | |||||||| |||||||||||| |
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| T |
22216045 |
ttttgatttgattatagattttgagatctgggttttgtttgtgtttgtgtaaaagtgtgaaagtttggatttttttgg-aaattgaggttggtttttagg |
22216143 |
T |
|
| Q |
100 |
gtttttgatgtttggtaattgat |
122 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
22216144 |
gtttttgatgtttggtaattgat |
22216166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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