View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5582_low_13 (Length: 280)
Name: NF5582_low_13
Description: NF5582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5582_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 121; Significance: 5e-62; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 146 - 270
Target Start/End: Complemental strand, 35936856 - 35936732
Alignment:
| Q |
146 |
ccacacttcgaattcaaacatttagaaatgagaaaacagtatccatcaaacatttagaaatcagaaaacagtctccaacactgaacattcaaccccactc |
245 |
Q |
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| T |
35936856 |
ccacacttcgaattcaaacatttagaaatgagaaaacagtatccatcaaacatttagaaatcagaacacagtctccaacactgaacattcaaccccactc |
35936757 |
T |
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| Q |
246 |
acaaaaatcaagcattccagaataa |
270 |
Q |
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| T |
35936756 |
acaaaaatcaagcattccagaataa |
35936732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 9 - 94
Target Start/End: Complemental strand, 35936993 - 35936908
Alignment:
| Q |
9 |
acatcatcaaaatcaaccacacttcaaattcaaacatttaagaatcagagaaaacaacatccaaaaccgaacattcgactccactg |
94 |
Q |
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| T |
35936993 |
acatcatcaaaatcaaccacacttcaaattcaaacatttaagaatcagagaaaacaacatccaaaaccgaacactcgactccactg |
35936908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 48
Target Start/End: Complemental strand, 35936872 - 35936833
Alignment:
| Q |
9 |
acatcatcaaaatcaaccacacttcaaattcaaacattta |
48 |
Q |
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| T |
35936872 |
acatcatcaaaatcaaccacacttcgaattcaaacattta |
35936833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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