View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5582_low_17 (Length: 251)
Name: NF5582_low_17
Description: NF5582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5582_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 12 - 176
Target Start/End: Original strand, 34070935 - 34071101
Alignment:
| Q |
12 |
gagagaataattataatgtttgttattagagatttactattttataccataagtcttgacgctactttattgtctttcgagatttttcatgggatt--ta |
109 |
Q |
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| T |
34070935 |
gagagaataattataatgtttgttattagagatttgctattttataccataagtcttgacgctactttgttgtctttcgagatttttcatgggatttata |
34071034 |
T |
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| Q |
110 |
tatatgttgaatgctttctttcttttgttttatttgtttatctatgtgatgtgatatttagcttatt |
176 |
Q |
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| T |
34071035 |
tatatgttgcatgctttctttcgtttgttttatttgtttatttatgtgatgtgatatttagcttatt |
34071101 |
T |
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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 30058666 - 30058716
Alignment:
| Q |
13 |
agagaataattataatgtttgttattagagatttactattttataccataa |
63 |
Q |
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| T |
30058666 |
agagaataattataatgtttattattagagctttgctattttatacgataa |
30058716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 30156931 - 30156981
Alignment:
| Q |
13 |
agagaataattataatgtttgttattagagatttactattttataccataa |
63 |
Q |
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| T |
30156931 |
agagaataattataatgtttatgattagaggtttactattttatacgataa |
30156981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 41026655 - 41026701
Alignment:
| Q |
12 |
gagagaataattataatgtttgttattagagatttactattttatac |
58 |
Q |
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| T |
41026655 |
gagagaacaattataatgtttgtgattagagctttactatgttatac |
41026701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 63
Target Start/End: Original strand, 38043190 - 38043232
Alignment:
| Q |
21 |
attataatgtttgttattagagatttactattttataccataa |
63 |
Q |
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|||||||||||||||||||||| |||| |||||||||| |||| |
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| T |
38043190 |
attataatgtttgttattagagctttattattttatacaataa |
38043232 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 5557884 - 5557929
Alignment:
| Q |
20 |
aattataatgtttgttattagagatttactattttataccataagt |
65 |
Q |
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| T |
5557884 |
aattataatatttgttgttagagctttactattttatacgataagt |
5557929 |
T |
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