View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5582_low_18 (Length: 250)
Name: NF5582_low_18
Description: NF5582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5582_low_18 |
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| [»] chr6 (1 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 18 - 250
Target Start/End: Complemental strand, 2103330 - 2103076
Alignment:
| Q |
18 |
aaaaatataggatgcattaaaacttgtgttccccttccaaatacaaatatgaaaataaattgtaaacaatatt----------------------gcaac |
95 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
2103330 |
aaaaatatagaatgcattaaaacttgtgttccccttccaaatacaaatatgaaaataaattgtaaacaatatttcttaatgacagtatatccattgcaac |
2103231 |
T |
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| Q |
96 |
caaacacaagtgaaagaagnnnnnnnaaagcaactttggctgtaagtcattgctatttcatctaccaggaaatcaaagaattgaaacctataagaactca |
195 |
Q |
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||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |
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| T |
2103230 |
caaacacaagtgaaagatgtttttttaaagcaactttggctgtaagtcattgctatttcatctactaggaaatcaaagaattgaaaccaataagaactca |
2103131 |
T |
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| Q |
196 |
gaaaagtcttgtgaagtctaacctccaagatttttgccgcgatttgcttgagcat |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
2103130 |
gaaaagtcttgtgaagtctaacctccaagatttttgccacgatttgcttgagcat |
2103076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 88 - 250
Target Start/End: Original strand, 39182404 - 39182563
Alignment:
| Q |
88 |
attgcaaccaaacacaagtgaaagaagnnnnnnnaaagcaactttggctgtaagtcattgctatttcatctaccaggaaatcaaagaattgaaacctata |
187 |
Q |
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||||||||||||||||||||||||| | |||||| ||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||| |
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| T |
39182404 |
attgcaaccaaacacaagtgaaagatgtttgtttaaagcagctttggctgtaagtc-ttgctatttcatctactagaaaatcaaagaattgaaacctata |
39182502 |
T |
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| Q |
188 |
agaactcagaaaagtcttgtgaagtctaacctccaagatttttgccgcgatttgcttgagcat |
250 |
Q |
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| T |
39182503 |
agaactca--aaagtcttgtgaagtctaacctccaagatttttgccgcgatttgcttgagcat |
39182563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 39182366 - 39182399
Alignment:
| Q |
13 |
aaaataaaaatataggatgcattaaaacttgtgt |
46 |
Q |
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|||| ||||||||||||||||||||||||||||| |
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| T |
39182366 |
aaaaaaaaaatataggatgcattaaaacttgtgt |
39182399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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