View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5582_low_3 (Length: 443)

Name: NF5582_low_3
Description: NF5582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5582_low_3
NF5582_low_3
[»] chr1 (2 HSPs)
chr1 (258-425)||(29929991-29930158)
chr1 (111-193)||(29930223-29930314)


Alignment Details
Target: chr1 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 258 - 425
Target Start/End: Complemental strand, 29930158 - 29929991
Alignment:
Q  258 acacatacacgcacgtgcttattcaggtgggttgtggatcagtcaccgtcgatttcttggctaccgtttctgcttaccctaagccagatgataaaatcag 357  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  29930158 acacatacacgcacgtgcttattcaggtgggttgtggatcagtcaccgtcgatttcttggctaccgtttctgcttaccctaaaccagatgataaaatcag 29930059  T
Q  358 aaccaccaatttgaaggttgcttcctttttctgaattgttttaagctaatatataattcattttgtat 425  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  29930058 aactaccaatttgaaggttgcttcctttttctgaattgttttaagctaatatagaattgattttgtat 29929991  T

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Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 111 - 193
Target Start/End: Complemental strand, 29930314 - 29930223
Alignment:
Q  111 cagtcaacaaagaatcatcatcgctgcagaaatttgaagctcaaaatg---------tcctcctccgttcctcaaaaggccaccgttgtgcg 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||    
T  29930314 cagtcaacaaagaatcatcatcgctgcagaaatttgaagctcaaaatgtgctcctcctcctcctccgttcctcaaaaggccaccgttgtgcg 29930223  T

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