View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5582_low_5 (Length: 410)
Name: NF5582_low_5
Description: NF5582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5582_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 28 - 262
Target Start/End: Original strand, 1121565 - 1121799
Alignment:
| Q |
28 |
tgagcaaaattacctttggagagaacaggggtttgaccgctaaggtggtgaagaaccatggcggctctggtgagacgatgtctactttcaccaccaacgg |
127 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1121565 |
tgagcaaaattacctttagagagaacaggggtttgaccgctaaggtggtgaagaaccatggcggctctggtgagacgatgtctactttcaccaccaacgg |
1121664 |
T |
|
| Q |
128 |
agatgttgagtacaagcttttgcactttgatatccctcaatggattattcaacagtttcttctcgtaagcctgtcattttcatctttgattattgaaaga |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1121665 |
agatgttgagtacaagcttttgcactttgatatccctcaatggattattcaacagtttcttctcgtaagcctgtcattttcatctttgattattgaaaga |
1121764 |
T |
|
| Q |
228 |
aataatacatttgtacatatgaatgtttagataaa |
262 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
1121765 |
aataatacatttgtacatatgaatgtttagataaa |
1121799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 260 - 369
Target Start/End: Original strand, 1121834 - 1121943
Alignment:
| Q |
260 |
aaacacggacacttctcatattaagtgtttttggtgtcggacactaatacatataattacaccagattatatgatttctctcaaaattgaatattatata |
359 |
Q |
| |
|
||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
1121834 |
aaacacggacactcctcatattaagggtttctggtgtcggacactaatacatataattacacgagattatatgatttttctcaaaattgaatattatata |
1121933 |
T |
|
| Q |
360 |
tttaggcgaa |
369 |
Q |
| |
|
||||| |||| |
|
|
| T |
1121934 |
tttagtcgaa |
1121943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 91 - 166
Target Start/End: Original strand, 1125006 - 1125078
Alignment:
| Q |
91 |
gctctggtgagacgatgtctactttcaccaccaacggagatgttgagtacaagcttttgcactttgatatccctca |
166 |
Q |
| |
|
|||||||||||||||| || ||||||||| ||||||||||||||| ||||| |||||||||||||| ||||||| |
|
|
| T |
1125006 |
gctctggtgagacgatctccactttcacc---aacggagatgttgaggacaagtttttgcactttgatttccctca |
1125078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University