View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5582_low_7 (Length: 378)
Name: NF5582_low_7
Description: NF5582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5582_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 18 - 368
Target Start/End: Complemental strand, 34320660 - 34320310
Alignment:
| Q |
18 |
aacacaaaccttttacacaccacattgttttttctcgttaacacaagttctgggaaaatagttaaatccctttgtggaaaaaccgaagctcctccatcaa |
117 |
Q |
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| T |
34320660 |
aacacaaaccttttacacaccacattgttttttctcgttaacacaagttctgggaaaatagttaaatccctttgtggaaaaacagaagctcctccatcaa |
34320561 |
T |
|
| Q |
118 |
gtaaaggaaaaggtaatactaataaccctttatcttcttcttcttcttgtaatttttggttgatgatggaccaatcattcatgaagttgaaaatggttga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34320560 |
gtaaaggaaaaggtaatactaataaccctttatcttcttcttcttcttgtaatttttggttgatgatggaccaatcattcatgaagttgaaaatggttga |
34320461 |
T |
|
| Q |
218 |
cgcatcaccaattttgtgactcatgcaaatacttatcgccattcctccacatgcgaaacagttgatttgaacagctatcaaagtatcgctccaatccatg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34320460 |
cgcatcaccaattttgtgactcatgcaaatacttatcgccattcctccacatgcgaaacagttgatttgaacagctatcaaagtatcgctccaatccatg |
34320361 |
T |
|
| Q |
318 |
tctttccattgcaattcgtcgggaaacaaagggttcaatattttatctgtg |
368 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
34320360 |
tctttccattgcaatttgtcgggaaacaaagggttcaatattttatctgtg |
34320310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 18 - 355
Target Start/End: Complemental strand, 34329571 - 34329231
Alignment:
| Q |
18 |
aacacaaaccttttacacaccacattgttttttctcgttaacacaagttctgggaaaatagttaaatccctttgtggaaaaaccgaagctcctccatcaa |
117 |
Q |
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|||||||| |||||||||||||||||||||| |||| | | ||||||||| | ||||||| |||||| ||||||||||| | |||||||||||||||| |
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| T |
34329571 |
aacacaaatcttttacacaccacattgttttctctcttaagaacaagttcttgaaaaataggtaaatctctttgtggaaacattgaagctcctccatcaa |
34329472 |
T |
|
| Q |
118 |
gtaaaggaaaaggtaatactaataaccctttatcttcttcttcttctt---gtaatttttggttgatgatggaccaatcattcatgaagttgaaaatggt |
214 |
Q |
| |
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| ||| |||| |||||| ||||||||||||| ||| |||||| ||||| |||| |||| |||||| |||||||||||||||||||||||||||| || |
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| T |
34329471 |
ggaaatgaaagggtaattctaataaccctttttctccttctttttcttttggtaaattttcgttgataatggaccaatcattcatgaagttgaaaagtgt |
34329372 |
T |
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| Q |
215 |
tgacgcatcaccaattttgtgactcatgcaaatacttatcgccattcctccacatgcgaaacagttgatttgaacagctatcaaagtatcgctccaatcc |
314 |
Q |
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|| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||| ||||| || ||||||||| |
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| T |
34329371 |
cgaaccatcaccaattttgtgactcatgcaaacacttatcgccattcctccacatgcaaaacagttgatttgaatggctattaaagtttcactccaatcc |
34329272 |
T |
|
| Q |
315 |
atgtctttccattgcaattcgtcgggaaacaaagggttcaa |
355 |
Q |
| |
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|| ||||||||||||||||| || || |||||||||||||| |
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| T |
34329271 |
atttctttccattgcaattcatccgggaacaaagggttcaa |
34329231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 104; Significance: 9e-52; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 172 - 355
Target Start/End: Original strand, 36633111 - 36633294
Alignment:
| Q |
172 |
tttggttgatgatggaccaatcattcatgaagttgaaaatggttgacgcatcaccaattttgtgactcatgcaaatacttatcgccattcctccacatgc |
271 |
Q |
| |
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|||||||||| ||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
36633111 |
tttggttgatagtggcccaatcattcatgaagttgaaaacggttgaagcatcaccaattttgtgactcatgcaaatacttatagccattcctccacatgc |
36633210 |
T |
|
| Q |
272 |
gaaacagttgatttgaacagctatcaaagtatcgctccaatccatgtctttccattgcaattcgtcgggaaacaaagggttcaa |
355 |
Q |
| |
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|| ||||| ||||||| ||||| ||| | | ||||||||||||||||||||||| ||||| || || |||||||||||||| |
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| T |
36633211 |
aaagcagtttatttgaatggctataaaacttgcactccaatccatgtctttccattgtaattcatcagggaacaaagggttcaa |
36633294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 21 - 355
Target Start/End: Original strand, 36627399 - 36627727
Alignment:
| Q |
21 |
acaaaccttttacacaccacattgttttttctcgttaacacaagttctgggaaaatagttaaatccctttgtggaaaaaccgaagctcctccatcaagta |
120 |
Q |
| |
|
|||||||||||| | || |||||||||| | || ||| ||| | ||||||||| |||| ||||||||||||||||||| | || ||| ||||||||| |
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| T |
36627399 |
acaaaccttttaaatacgacattgttttctttctttatcaccatttctgggaagataggcaaatccctttgtggaaaaattgttgcccctgcatcaagta |
36627498 |
T |
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| Q |
121 |
aaggaaaaggtaatactaataaccctttatcttcttcttcttcttgtaatttttggttgatgatggaccaatcattcatgaagttgaaaatggttgacgc |
220 |
Q |
| |
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|| || ||| ||||||||||| |||| | ||||| ||| | ||||||||||| |||| ||||||||||||||| |||||||||||||| || |
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| T |
36627499 |
aactcaagggtgatactaataactcttttttatcttcctct------atcttttggttgataatggcccaatcattcatgaatttgaaaatggttgaagc |
36627592 |
T |
|
| Q |
221 |
atcaccaattttgtgactcatgcaaatacttatcgccattcctccacatgcgaaacagttgatttgaacagctatcaaagtatcgctccaatccatgtct |
320 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| ||||||||||||||| || || || ||||||| ||||| ||| | | ||||||||||| ||| |
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| T |
36627593 |
atcaccaattttgtgagtcatgcaaatacttattaccattcctccacatgtaaaccaatttatttgaatggctataaaacttgctctccaatccatttct |
36627692 |
T |
|
| Q |
321 |
ttccattgcaattcgtcgggaaacaaagggttcaa |
355 |
Q |
| |
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|||||||| ||||| || || |||||||||||||| |
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| T |
36627693 |
ttccattgtaattcatcagggaacaaagggttcaa |
36627727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 171 - 352
Target Start/End: Original strand, 36622306 - 36622487
Alignment:
| Q |
171 |
ttttggttgatgatggaccaatcattcatgaagttgaaaatggttgacgcatcaccaattttgtgactcatgcaaatacttatcgccattcctccacatg |
270 |
Q |
| |
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||||||| ||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||| |||| |
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| T |
36622306 |
ttttggtagataatggcccaatcattcatgaagttgaaaatggttgcagcatcaccaattttgtgactaatgcaaatacttattaccattcctccgcatg |
36622405 |
T |
|
| Q |
271 |
cgaaacagttgatttgaacagctatcaaagtatcgctccaatccatgtctttccattgcaattcgtcgggaaacaaagggtt |
352 |
Q |
| |
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| || || || | ||||| ||||| ||| | | ||||||||||| ||||||||||| ||||| || || ||||||||||| |
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| T |
36622406 |
caaaccaatttacttgaatggctataaaactcgctctccaatccatttctttccattgtaattcatcagggaacaaagggtt |
36622487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 21 - 99
Target Start/End: Original strand, 36622174 - 36622252
Alignment:
| Q |
21 |
acaaaccttttacacaccacattgttttttctcgttaacacaagttctgggaaaatagttaaatccctttgtggaaaaa |
99 |
Q |
| |
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|||||||||||| || | |||||||||| |||| |||||||| |||||||||||||| |||||||||||||||||||| |
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| T |
36622174 |
acaaaccttttaaactcaacattgttttctctctttaacacattttctgggaaaataggtaaatccctttgtggaaaaa |
36622252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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