View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5583-Insertion-1 (Length: 163)
Name: NF5583-Insertion-1
Description: NF5583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5583-Insertion-1 |
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Alignment Details
Target: chr5 (Bit Score: 130; Significance: 1e-67; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 8 - 148
Target Start/End: Complemental strand, 34813611 - 34813470
Alignment:
| Q |
8 |
aaaagggttaagcagaagg-aacaaagatcagtattctatgcagttggaatttcatcagaccatcctccagaaccatcatcaacatcacctccaggagta |
106 |
Q |
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| T |
34813611 |
aaaagggttaagcagaaggtaacaaagatcagtattctatgcagttggaatttcatcagaccatcctccagaaccatcatcaacatcacctctaggagta |
34813512 |
T |
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| Q |
107 |
cataataatggcttcgaaagatatgttagtctcctacatcca |
148 |
Q |
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| T |
34813511 |
cataataatggcttcgaaagatatgttagtctcctacatcca |
34813470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 1e-39
Query Start/End: Original strand, 15 - 148
Target Start/End: Complemental strand, 35864037 - 35863903
Alignment:
| Q |
15 |
ttaagcagaagg-aacaaagatcagtattctatgcagttggaatttcatcagaccatcctccagaaccatcatcaacatcacctccaggagtacataata |
113 |
Q |
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|||||||||||| |||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
35864037 |
ttaagcagaaggtaacaaagatcagtattctatgcagttaggatttcagcagaccatcctccagaaccatcatctacatcacctccaggagtacaaaata |
35863938 |
T |
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| Q |
114 |
atggcttcgaaagatatgttagtctcctacatcca |
148 |
Q |
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| T |
35863937 |
atgagttcacaggacatgttagtctcctacatcca |
35863903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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