View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5583-Insertion-3 (Length: 370)
Name: NF5583-Insertion-3
Description: NF5583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5583-Insertion-3 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 7 - 370
Target Start/End: Complemental strand, 6323807 - 6323445
Alignment:
| Q |
7 |
agaaacacgcttctcccaacaccaagaacattaaaacaattccaggagcttttctcaaatgtgttttttgcaaacatgaaaaaggcatatttgaatcaaa |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
6323807 |
agaaacacgcttctcccaacaccaagaacaataaaacaattccaggagcttttctcaaatgtgttttttgcaaacatgaaaaaggcatatctgaatcaaa |
6323708 |
T |
|
| Q |
107 |
agaacatatccaaaacgcgcttctggaatgcactttcttcaaccaaaatggcttttgccagaacgtgactccaatggaaaaatttggaccatgaattgcg |
206 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
6323707 |
agaacatatccaaaacacgcttctggaatgcactttcttcaaccaaaatggcttttgccaaaacgtgactccaatggaaaa-tttggaccatgaattgcg |
6323609 |
T |
|
| Q |
207 |
ttccctaacacactttgtgattctttgaaacggacgattgaaaccagtttcaaccaaaagtgtattcgctgccaaactacgaaactctggaaaattgcaa |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6323608 |
ttccctaacacactttgtgattctttgaaacggacgattgaaaccagtttcaaccaaaagcgtattcgctgccaaactacgaaactctggaaaattgcaa |
6323509 |
T |
|
| Q |
307 |
tgatatgtatcatgacgaacaaaagcgaattcatccaaaatcgctttttaaaagaacgcgtttt |
370 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6323508 |
tgatacgtatcatgacgaacaaaagcgaattcatccaaaatcgctttttaaaagaacgcgtttt |
6323445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 220 - 310
Target Start/End: Complemental strand, 6790721 - 6790631
Alignment:
| Q |
220 |
tttgtgattctttgaaacggacgattgaaaccagtttcaaccaaaagtgtatt-cgctgccaaactacgaaactctggaaaattgcaatgat |
310 |
Q |
| |
|
||||| ||||||| |||| |||||| |||| |||||| ||||||||| || || |||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
6790721 |
tttgtaattctttcaaactgacgatcgaaaacagtttgaaccaaaagcgtttttcgctgc-aaactacgaaacgctggaaaattgcaatgat |
6790631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University