View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5583-Insertion-4 (Length: 438)

Name: NF5583-Insertion-4
Description: NF5583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5583-Insertion-4
NF5583-Insertion-4
[»] chr1 (14 HSPs)
chr1 (8-161)||(4015229-4015382)
chr1 (16-161)||(4570593-4570741)
chr1 (288-420)||(4570561-4570693)
chr1 (288-427)||(4015270-4015406)
chr1 (288-337)||(21855820-21855869)
chr1 (55-116)||(21855725-21855786)
chr1 (54-110)||(4017083-4017139)
chr1 (359-432)||(21855716-21855786)
chr1 (287-335)||(4017168-4017216)
chr1 (288-341)||(10218605-10218658)
chr1 (392-429)||(39379412-39379449)
chr1 (359-417)||(4017083-4017138)
chr1 (394-438)||(4366828-4366872)
chr1 (395-435)||(10218715-10218755)
[»] chr5 (3 HSPs)
chr5 (288-337)||(24331336-24331385)
chr5 (55-116)||(24331241-24331302)
chr5 (359-432)||(24331232-24331302)
[»] chr4 (3 HSPs)
chr4 (392-434)||(3561304-3561346)
chr4 (392-438)||(3565426-3565472)
chr4 (392-425)||(3557408-3557441)
[»] chr7 (7 HSPs)
chr7 (390-420)||(29880954-29880984)
chr7 (392-429)||(29431343-29431380)
chr7 (57-114)||(29866911-29866968)
chr7 (60-113)||(29880931-29880984)
chr7 (392-429)||(29884951-29884988)
chr7 (392-420)||(22021074-22021102)
chr7 (392-420)||(22036792-22036820)


Alignment Details
Target: chr1 (Bit Score: 154; Significance: 2e-81; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 8 - 161
Target Start/End: Complemental strand, 4015382 - 4015229
Alignment:
Q  8 aactggagcttataaagtggtggcgttctgtaaacgagagacaacatcagatgtgaaagttctcaacttgggtgttgatgtttggagaaacattgaaagt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4015382 aactggagcttataaagtggtggcgttctgtaaacgagagacaacatcagatgtgaaagttctcaacttgggtgttgatgtttggagaaacattgaaagt 4015283  T
Q  108 tttcctgttgttcttgaccacgaacatgtgtgtttgagtggtactataaactgg 161  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4015282 tttcctgttgttcttgaccacgaacatgtgtgtttgagtggtactataaactgg 4015229  T

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Target: chr1; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 16 - 161
Target Start/End: Original strand, 4570593 - 4570741
Alignment:
Q  16 cttataaagtggtggcgttctgtaaacgagagacaacatcagatgtgaaagttctcaacttgggtgttgat---gtttggagaaacattgaaagttttcc 112  Q
    |||||||||||||||||| |||||| | ||||||| ||||||| || | ||||||||| ||||||| ||||   ||||||||||| ||||||||||||||    
T  4570593 cttataaagtggtggcgtactgtaatcaagagacagcatcagaggtcagagttctcaatttgggtggtgatgatgtttggagaaatattgaaagttttcc 4570692  T
Q  113 tgttgttcttgaccacgaacatgtgtgtttgagtggtactataaactgg 161  Q
    |  |||||||| |||| ||| ||||| ||||||||| ||| | ||||||    
T  4570693 tactgttcttggccacaaacctgtgtatttgagtggcactgtgaactgg 4570741  T

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Target: chr1; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 288 - 420
Target Start/End: Original strand, 4570561 - 4570693
Alignment:
Q  288 ctttgcctttggatgcgataattcaaccggaacttataaagtggtggcgttctgcaat-attaatcaacaaccagaggtgagagttctcaacttgggtgg 386  Q
    ||||| ||||||||| |||||||||| || |||||||||||||||||||| ||| ||| |  |  || || | |||||| ||||||||||| ||||||||    
T  4570561 ctttggctttggatgtgataattcaaacgaaacttataaagtggtggcgtactgtaatcaagagacagcatc-agaggtcagagttctcaatttgggtgg 4570659  T
Q  387 tcgtgatgtttggagaaatattgaaagttttcct 420  Q
    |  |||||||||||||||||||||||||||||||    
T  4570660 tgatgatgtttggagaaatattgaaagttttcct 4570693  T

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Target: chr1; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 288 - 427
Target Start/End: Complemental strand, 4015406 - 4015270
Alignment:
Q  288 ctttgcctttggatgcgataattcaaccggaacttataaagtggtggcgttctg-caatattaatcaacaaccagaggtgagagttctcaacttgggtgg 386  Q
    ||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||  ||    |  |||| | |||| |||| |||||||||||||||||     
T  4015406 ctttgcctttggatgtgataattcaactggagcttataaagtggtggcgttctgtaaacgagagacaac-atcagatgtgaaagttctcaacttgggtg- 4015309  T
Q  387 tcgtgatgtttggagaaatattgaaagttttcctgttgttc 427  Q
       ||||||||||||||| ||||||||||||||||||||||    
T  4015308 --ttgatgtttggagaaacattgaaagttttcctgttgttc 4015270  T

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Target: chr1; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 288 - 337
Target Start/End: Complemental strand, 21855869 - 21855820
Alignment:
Q  288 ctttgcctttggatgcgataattcaaccggaacttataaagtggtggcgt 337  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  21855869 ctttgcctttggatgtgataattcaaccggaacttataaagtggtggcgt 21855820  T

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Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 55 - 116
Target Start/End: Complemental strand, 21855786 - 21855725
Alignment:
Q  55 cagatgtgaaagttctcaacttgggtgttgatgtttggagaaacattgaaagttttcctgtt 116  Q
    |||| |||| |||| ||||| |||||| |||||||||||||||||| |||||||||||||||    
T  21855786 cagaggtgagagttatcaacatgggtgatgatgtttggagaaacatcgaaagttttcctgtt 21855725  T

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Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 54 - 110
Target Start/End: Complemental strand, 4017139 - 4017083
Alignment:
Q  54 tcagatgtgaaagttctcaacttgggtgttgatgtttggagaaacattgaaagtttt 110  Q
    ||||| |||||||||||||| ||||||| ||||||||||||||| ||||| ||||||    
T  4017139 tcagaggtgaaagttctcaatttgggtgatgatgtttggagaaatattgacagtttt 4017083  T

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Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 359 - 432
Target Start/End: Complemental strand, 21855786 - 21855716
Alignment:
Q  359 cagaggtgagagttctcaacttgggtggtcgtgatgtttggagaaatattgaaagttttcctgttgttcctttt 432  Q
    |||||||||||||| ||||| |||||| |   |||||||||||||| || ||||||||||||||| ||||||||    
T  21855786 cagaggtgagagttatcaacatgggtgat---gatgtttggagaaacatcgaaagttttcctgttattcctttt 21855716  T

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Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 335
Target Start/End: Complemental strand, 4017216 - 4017168
Alignment:
Q  287 gctttgcctttggatgcgataattcaaccggaacttataaagtggtggc 335  Q
    ||||||| |||||||| ||||||||||| | ||||||||||||||||||    
T  4017216 gctttgcatttggatgtgataattcaactgcaacttataaagtggtggc 4017168  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 341
Target Start/End: Original strand, 10218605 - 10218658
Alignment:
Q  288 ctttgcctttggatgcgataattcaaccggaacttataaagtggtggcgttctg 341  Q
    |||||| |||||||| | ||||||||||||||  | ||||||||||||||||||    
T  10218605 ctttgcatttggatgtgttaattcaaccggaagctttaaagtggtggcgttctg 10218658  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 429
Target Start/End: Complemental strand, 39379449 - 39379412
Alignment:
Q  392 atgtttggagaaatattgaaagttttcctgttgttcct 429  Q
    ||||||||||||||||||||||||| || |||||||||    
T  39379449 atgtttggagaaatattgaaagtttcccggttgttcct 39379412  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 417
Target Start/End: Complemental strand, 4017138 - 4017083
Alignment:
Q  359 cagaggtgagagttctcaacttgggtggtcgtgatgtttggagaaatattgaaagtttt 417  Q
    ||||||||| ||||||||| ||||||| |   |||||||||||||||||||| ||||||    
T  4017138 cagaggtgaaagttctcaatttgggtgat---gatgtttggagaaatattgacagtttt 4017083  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 394 - 438
Target Start/End: Complemental strand, 4366872 - 4366828
Alignment:
Q  394 gtttggagaaatattgaaagttttcctgttgttccttttcgtttg 438  Q
    ||||||||| ||||||||||||||||| |||||||| ||| ||||    
T  4366872 gtttggagagatattgaaagttttcctattgttcctcttcatttg 4366828  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 395 - 435
Target Start/End: Original strand, 10218715 - 10218755
Alignment:
Q  395 tttggagaaatattgaaagttttcctgttgttccttttcgt 435  Q
    |||||||||||||||||| ||||||||| ||||||| ||||    
T  10218715 tttggagaaatattgaaacttttcctgtggttccttatcgt 10218755  T

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Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 288 - 337
Target Start/End: Complemental strand, 24331385 - 24331336
Alignment:
Q  288 ctttgcctttggatgcgataattcaaccggaacttataaagtggtggcgt 337  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  24331385 ctttgcctttggatgtgataattcaaccggaacttataaagtggtggcgt 24331336  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 55 - 116
Target Start/End: Complemental strand, 24331302 - 24331241
Alignment:
Q  55 cagatgtgaaagttctcaacttgggtgttgatgtttggagaaacattgaaagttttcctgtt 116  Q
    |||| |||| |||| ||||| |||||| |||||||||||||||||| |||||||||||||||    
T  24331302 cagaggtgagagttatcaacatgggtgatgatgtttggagaaacatcgaaagttttcctgtt 24331241  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 359 - 432
Target Start/End: Complemental strand, 24331302 - 24331232
Alignment:
Q  359 cagaggtgagagttctcaacttgggtggtcgtgatgtttggagaaatattgaaagttttcctgttgttcctttt 432  Q
    |||||||||||||| ||||| |||||| |   |||||||||||||| || ||||||||||||||| ||||||||    
T  24331302 cagaggtgagagttatcaacatgggtgat---gatgtttggagaaacatcgaaagttttcctgttattcctttt 24331232  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 392 - 434
Target Start/End: Complemental strand, 3561346 - 3561304
Alignment:
Q  392 atgtttggagaaatattgaaagttttcctgttgttccttttcg 434  Q
    ||||||||||||||||||||||||||||| |||||||| ||||    
T  3561346 atgtttggagaaatattgaaagttttcctattgttcctcttcg 3561304  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 392 - 438
Target Start/End: Original strand, 3565426 - 3565472
Alignment:
Q  392 atgtttggagaaatattgaaagttttcctgttgttccttttcgtttg 438  Q
    ||||||||||||||||||||||||| || | ||||||| ||||||||    
T  3565426 atgtttggagaaatattgaaagtttcccggctgttcctcttcgtttg 3565472  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 425
Target Start/End: Original strand, 3557408 - 3557441
Alignment:
Q  392 atgtttggagaaatattgaaagttttcctgttgt 425  Q
    ||||||||||||||||||||||||| ||||||||    
T  3557408 atgtttggagaaatattgaaagtttccctgttgt 3557441  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 390 - 420
Target Start/End: Original strand, 29880954 - 29880984
Alignment:
Q  390 tgatgtttggagaaatattgaaagttttcct 420  Q
    |||||||||||||||||||||||||||||||    
T  29880954 tgatgtttggagaaatattgaaagttttcct 29880984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 429
Target Start/End: Complemental strand, 29431380 - 29431343
Alignment:
Q  392 atgtttggagaaatattgaaagttttcctgttgttcct 429  Q
    ||||||||||| ||||||||||||| ||||||||||||    
T  29431380 atgtttggagagatattgaaagtttccctgttgttcct 29431343  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 114
Target Start/End: Original strand, 29866911 - 29866968
Alignment:
Q  57 gatgtgaaagttctcaacttgggtgttgatgtttggagaaacattgaaagttttcctg 114  Q
    ||||||| ||||||||| || |||| ||||  ||||||||| ||||||||||||||||    
T  29866911 gatgtgagagttctcaatttcggtgatgatcgttggagaaatattgaaagttttcctg 29866968  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 113
Target Start/End: Original strand, 29880931 - 29880984
Alignment:
Q  60 gtgaaagttctcaacttgggtgttgatgtttggagaaacattgaaagttttcct 113  Q
    |||| |||||||||  | |||| ||||||||||||||| |||||||||||||||    
T  29880931 gtgagagttctcaatcttggtgatgatgtttggagaaatattgaaagttttcct 29880984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 429
Target Start/End: Original strand, 29884951 - 29884988
Alignment:
Q  392 atgtttggagaaatattgaaagttttcctgttgttcct 429  Q
    ||||||||||| |||||||||||||||| |||||||||    
T  29884951 atgtttggagagatattgaaagttttccagttgttcct 29884988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 392 - 420
Target Start/End: Original strand, 22021074 - 22021102
Alignment:
Q  392 atgtttggagaaatattgaaagttttcct 420  Q
    |||||||||||||||||||||||||||||    
T  22021074 atgtttggagaaatattgaaagttttcct 22021102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 392 - 420
Target Start/End: Original strand, 22036792 - 22036820
Alignment:
Q  392 atgtttggagaaatattgaaagttttcct 420  Q
    |||||||||||||||||||||||||||||    
T  22036792 atgtttggagaaatattgaaagttttcct 22036820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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