View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5583_high_6 (Length: 313)
Name: NF5583_high_6
Description: NF5583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5583_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 17 - 296
Target Start/End: Complemental strand, 5281877 - 5281605
Alignment:
| Q |
17 |
caaacactctttgagtttgaagacaaattttgctataaaatattggacactaacattctttttt--gacgcgtgtaaggaatgggagcgcaagaatcggc |
114 |
Q |
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| T |
5281877 |
caaacactctttgagtttgaagacaaattttgctataaaatattggacaccaacattcttttttttgacgcgtgtaaggaatgggagcgcaagaatcggc |
5281778 |
T |
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| Q |
115 |
ggaatctatggttatagtttaattaagtgactatatcctgattttgtttgtgttatttggcttcgttagggtaatctatacgttggattactgaaaactt |
214 |
Q |
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| T |
5281777 |
ggaatctatggttatagcttaattaagtgactatatcctgattttgtttgtgttatttggctttgttagggtaatctatatgttggattac--------- |
5281687 |
T |
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| Q |
215 |
tgaggaattcgattaatcttgatcaatcttaatcttatatatttgatatcacagcatggctcctagctttgtggtagatatt |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5281686 |
tgaggaattcgattaatcttgatcaatcttaatcttatatatttgatatcacagcatggctcctagctttgtggtagatatt |
5281605 |
T |
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