View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5583_high_7 (Length: 309)
Name: NF5583_high_7
Description: NF5583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5583_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 76 - 294
Target Start/End: Complemental strand, 6324020 - 6323802
Alignment:
| Q |
76 |
ttttaacagtctccctcaaactcaaaatggggaaatccactatttaagtttggaatacaatgaaagttaatatttaagtaactaagtaaaatcggggata |
175 |
Q |
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|||||||| ||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6324020 |
ttttaacaatctacctcaaactcaaaatggggaaatccactatttgagtttcgaatacaatgaaagttaatatttaagtaactaagtaaaatcggggata |
6323921 |
T |
|
| Q |
176 |
aaactagcaaatgacaaaaaatgataggaaaacatagaatgcccatattgaggcccaacaaagttctgatgaagcccaggcccaattgagaagttgagat |
275 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |
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| T |
6323920 |
aaactagcaaatgacaaaaaatgataggaaaacatagaatgcccatattgaggcccaacaaagttttgatgaagcccagacccaattgagaagttgagat |
6323821 |
T |
|
| Q |
276 |
gagttgtgcgtaaagaaac |
294 |
Q |
| |
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||||||||||||||||||| |
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| T |
6323820 |
gagttgtgcgtaaagaaac |
6323802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 142
Target Start/End: Original strand, 28124871 - 28124938
Alignment:
| Q |
76 |
ttttaacagtctccctcaaactcaaaatggggaaatcca-ctatttaagtttggaatacaatgaaagt |
142 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| || | |||| || |||||||||||||||||| |
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| T |
28124871 |
ttttaacagcctccctcaaactcaaaatggggaaattcaccaatttgagcttggaatacaatgaaagt |
28124938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 76 - 142
Target Start/End: Complemental strand, 4895532 - 4895465
Alignment:
| Q |
76 |
ttttaacagtctccctcaaactcaaaatgggg-aaatccactatttaagtttggaatacaatgaaagt |
142 |
Q |
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| T |
4895532 |
ttttaacagcctccctcaaactcaaaatggggaaaatcaccaatttgagcttggaatacaatgaaagt |
4895465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 206
Target Start/End: Complemental strand, 4880155 - 4880093
Alignment:
| Q |
145 |
atatttaagtaactaagtaaaatcggggataaaactagcaaatgacaaaaaa-tgataggaaa |
206 |
Q |
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||||| |||||||||| |||||| |||| || |||||||||||||||||||| |||||||||| |
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| T |
4880155 |
atattgaagtaactaaataaaatggggggtacaactagcaaatgacaaaaaactgataggaaa |
4880093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 139
Target Start/End: Complemental strand, 44963103 - 44963050
Alignment:
| Q |
86 |
ctccctcaaactcaaaatggggaaatccactatttaagtttggaatacaatgaa |
139 |
Q |
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||||||||||||||||||||| |||| ||| |||| |||||| ||||||||||| |
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| T |
44963103 |
ctccctcaaactcaaaatgggaaaattcacaatttgagtttgaaatacaatgaa |
44963050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 199 - 250
Target Start/End: Complemental strand, 18776604 - 18776553
Alignment:
| Q |
199 |
ataggaaaacatagaatgcccatattgaggcccaacaaagttctgatgaagc |
250 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
18776604 |
ataggaaaacatagaatgctcatattgaggcccaacaaagttctgataaagc |
18776553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 156 - 214
Target Start/End: Original strand, 26667306 - 26667364
Alignment:
| Q |
156 |
actaagtaaaatcggggataaaactagcaaatgacaaaaaatgataggaaaacatagaa |
214 |
Q |
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|||||||||||||| || |||||| || ||||||||||||||||||||||||||||||| |
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| T |
26667306 |
actaagtaaaatcgagggtaaaacaagtaaatgacaaaaaatgataggaaaacatagaa |
26667364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 142
Target Start/End: Complemental strand, 52520549 - 52520482
Alignment:
| Q |
76 |
ttttaacagtctccctcaaactcaaaatggggaaatcca-ctatttaagtttggaatacaatgaaagt |
142 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| || | |||| || |||||||||||||||||| |
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| T |
52520549 |
ttttaacagcctccctcaaactcaaaatggggaaattcaccaatttgagcttggaatacaatgaaagt |
52520482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 77 - 142
Target Start/End: Complemental strand, 5378679 - 5378613
Alignment:
| Q |
77 |
tttaacagtctccctcaaactcaaaatggggaaatcca-ctatttaagtttggaatacaatgaaagt |
142 |
Q |
| |
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|||||||| |||||||||||||||||||||||||| || | |||| || |||||||||||||||||| |
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| T |
5378679 |
tttaacagcctccctcaaactcaaaatggggaaattcaccaatttgagattggaatacaatgaaagt |
5378613 |
T |
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