View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5583_low_1 (Length: 501)
Name: NF5583_low_1
Description: NF5583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5583_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 255
Target Start/End: Complemental strand, 4914284 - 4914047
Alignment:
| Q |
18 |
tttattagtaattaaataaaatatagagtaaattattagctgtttaattctagaaattgtattctccagacaatttggtccttgaaattaatgaattcac |
117 |
Q |
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| T |
4914284 |
tttattagtaattaaataaaatatagagtaaattattagctgtttaattctagaaattgtattctccagacaatttggtccttgaaattaatgaattcac |
4914185 |
T |
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| Q |
118 |
aaaatgatccgaagattctcaatcacattagtcttccgagacaatttcaagaattaaattgattgatccaaacagattaataggatcaagaatattcata |
217 |
Q |
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| T |
4914184 |
aaaatgatccgaagattctcaatcacattagtcttccgagacaatttcaagaattaaattgattgatccaaacagattaataggatcaagaaaattcata |
4914085 |
T |
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| Q |
218 |
atcatttaggaaattcgatgattttagaatgtaaaccg |
255 |
Q |
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| T |
4914084 |
atcatttaggaaattcgatgattttagaatgtgaaccg |
4914047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 268 - 496
Target Start/End: Complemental strand, 4914057 - 4913829
Alignment:
| Q |
268 |
aatgtgaaccgtcgtctcactgaaaacaaaataatattgacaggattatgtggaatgaagaatctgcaggaacttgacctcagcagaaatggaatgagtg |
367 |
Q |
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| T |
4914057 |
aatgtgaaccgtcgtctcactgaaaacaaaataatattgacaggattatgtggaatgaagaatctgcaggaacttgacctcagcagaaatggaatgagtg |
4913958 |
T |
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| Q |
368 |
gttattttcctcaatgccttagaaacttgacaagcctcagagtacttgatttatcctcaaataattttgttggaaacattccatctttcatcattagtct |
467 |
Q |
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| T |
4913957 |
gttattttcctcaatgccttagaaacttgacaagcctcagagtacttgatttatcctcaaataattttgttggaaacattccatctttcatcattagtct |
4913858 |
T |
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| Q |
468 |
caagtctcttgaatatctatctccctttg |
496 |
Q |
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| T |
4913857 |
caagtctcttgaatatctatctctctttg |
4913829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 128; Significance: 6e-66; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 285 - 496
Target Start/End: Complemental strand, 32747050 - 32746840
Alignment:
| Q |
285 |
cactgaaaacaaaataatattgacaggattatgtggaatgaagaatctgcaggaacttgacctcagcagaaatggaatgagtggttattttcctcaatgc |
384 |
Q |
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|||||||||||||| ||||||| |||| | |||| |||||||||| | |||||||||||||||||||||||| ||||||||||| ||||||| || ||| |
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| T |
32747050 |
cactgaaaacaaaa-aatattggcaggtctctgtgaaatgaagaatttacaggaacttgacctcagcagaaatagaatgagtggtgattttccacattgc |
32746952 |
T |
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| Q |
385 |
cttagaaacttgacaagcctcagagtacttgatttatcctcaaataattttgttggaaacattccatctttcatcattagtctcaagtctcttgaatatc |
484 |
Q |
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| T |
32746951 |
cttagcaacttgacaaacctccaagtacttgatttatcctccaataattttgttggaaatattccatctttcatcactagtctcaagtctcttgaatatc |
32746852 |
T |
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| Q |
485 |
tatctccctttg |
496 |
Q |
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|||||| ||||| |
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| T |
32746851 |
tatctctctttg |
32746840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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