View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5583_low_2 (Length: 400)
Name: NF5583_low_2
Description: NF5583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5583_low_2 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 18 - 400
Target Start/End: Complemental strand, 39689662 - 39689278
Alignment:
| Q |
18 |
aaattatgtctaaccaaaacacatattccattctacataccccnnnnnnntagaggtcgaaagctgacgaaaatttatttgagagacaaaaagtaatagt |
117 |
Q |
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| T |
39689662 |
aaattatgtctaaccaaaacacatattccattctacataccccaaaaaaatagaggtcgaaagctgacgaaaatttatttgagagacaaaaagtaatagt |
39689563 |
T |
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| Q |
118 |
tattaagactaaa--gatagactatatattattacagagagtttggtgaataaaaaggggatttgaatgaaaataataatgttacattgagtttaatact |
215 |
Q |
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| T |
39689562 |
tattaagactaaaaagatagactatatattattacagagagtttggtgaataaaaaggggatttgaatgaaaataataatgttacattgagtttaatact |
39689463 |
T |
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| Q |
216 |
aataacaaagacaattaattagacaaagcaacccgtgaagtgcaagatatgttagcaagaatgactttgaagatctcaatatcacgtctgattctaagca |
315 |
Q |
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| T |
39689462 |
aataacaaagacaattaattagacaaagcaacccgtgaagtgcaagatatgttagcaagaatgactttgaagatctcaatatcacgtctgattctaagca |
39689363 |
T |
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| Q |
316 |
caccttgttggtatccatattctttagcagattgttccaacaattcaacaattttgggatggtgaatcactttgatgctcaccca |
400 |
Q |
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| T |
39689362 |
caccctgttggtatccatattctttagcagattgttccaacaattcaacaattttgggatggtgaatcactttgatgctcaccca |
39689278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 264 - 400
Target Start/End: Complemental strand, 39683949 - 39683813
Alignment:
| Q |
264 |
atgttagcaagaatgactttgaagatctcaatatcacgtctgattctaagcacaccttgttggtatccatattctttagcagattgttccaacaattcaa |
363 |
Q |
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||||||||||||||| |||| ||| |||| ||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||| |
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| T |
39683949 |
atgttagcaagaatgtctttaaagtcgtcaacatcacatatgattctaagcacaccttgttggtatccatactctttagcagattgttctaagaattcaa |
39683850 |
T |
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| Q |
364 |
caattttgggatggtgaatcactttgatgctcaccca |
400 |
Q |
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| T |
39683849 |
caatttttggatgatgaatcactttgatgctcaccca |
39683813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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