View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5584-Insertion-12 (Length: 231)
Name: NF5584-Insertion-12
Description: NF5584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5584-Insertion-12 |
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Alignment Details
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 8 - 217
Target Start/End: Original strand, 24789096 - 24789305
Alignment:
| Q |
8 |
attggggtgaagtgcatgtctcctggaagtgatgggaaaccaaccatgaaggctaaatcatttgtgtcagataaatacaaagagctttttgagatagctt |
107 |
Q |
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| T |
24789096 |
attggggtgaagtgcatgtctcctggaagtgatgggaaaccaaccatgaaggttaaatcatttgtgtcagataaatacaaagagctttttgagatagctt |
24789195 |
T |
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| Q |
108 |
ctgaatattgaaagctttctataattttatctttagtctactaatggaattgacatgtgaaaagtgtttaattatttgaagtgataaatatactcggtac |
207 |
Q |
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| T |
24789196 |
ctgaatattgaaagctttctataattttatctttagtctactaatggaattgacatgtgataagtgtttaattatttgaagtgataaatatactcggtac |
24789295 |
T |
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| Q |
208 |
ttacatccag |
217 |
Q |
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|||||||||| |
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| T |
24789296 |
ttacatccag |
24789305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 11 - 121
Target Start/End: Complemental strand, 24300049 - 24299939
Alignment:
| Q |
11 |
ggggtgaagtgcatgtctcctggaagtgatgggaaaccaaccatgaaggctaaatcatttgtgtcagataaatacaaagagctttttgagatagcttctg |
110 |
Q |
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||||||||| || | ||||| ||| ||||||||||||||| |||||||| ||||||||||| || |||||||||||| ||||||||||||||||||| |
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| T |
24300049 |
ggggtgaagcgcttttctccaggaggtgatgggaaaccaaacatgaaggtgaaatcatttgtatctgataaatacaaacagctttttgagatagcttcct |
24299950 |
T |
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| Q |
111 |
aatattgaaag |
121 |
Q |
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| T |
24299949 |
tatattgaaag |
24299939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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