View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5584-Insertion-2 (Length: 861)
Name: NF5584-Insertion-2
Description: NF5584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5584-Insertion-2 |
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Alignment Details
Target: chr3 (Bit Score: 70; Significance: 4e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 11 - 120
Target Start/End: Complemental strand, 24700497 - 24700388
Alignment:
| Q |
11 |
acaaatagaaatactaatatgttggctcgggaatttgttgggaagaggatgaaactgaaagcagatgattcatatagtgttactgatttccatgtgcaag |
110 |
Q |
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| T |
24700497 |
acaaatagagatacaaatatgttggctcggggatttgttgggaagaggatgaaactgaaaacaggtgattcatatagtgttattgatttccatacgtaat |
24700398 |
T |
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| Q |
111 |
gagggattat |
120 |
Q |
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| T |
24700397 |
gagggattat |
24700388 |
T |
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Target: chr2 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 149 - 221
Target Start/End: Complemental strand, 36236188 - 36236116
Alignment:
| Q |
149 |
gtcatgaacctggtgtgagcgcttatataggattggacaatcctcccctttgagccatagttttgaggtggag |
221 |
Q |
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| T |
36236188 |
gtcatgaacctcgtgtgagggtttatataggattgggcaatcctcccctttcagccatggttttgagggggag |
36236116 |
T |
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Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 171 - 230
Target Start/End: Original strand, 42761877 - 42761936
Alignment:
| Q |
171 |
ttatataggattggacaatcctcccctttgagccatagttttgaggtggagttaagttca |
230 |
Q |
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| T |
42761877 |
ttatataggattggacaatcttcccctttgagtcatggttttgaggtagagttaggttca |
42761936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 230
Target Start/End: Original strand, 6356718 - 6356777
Alignment:
| Q |
171 |
ttatataggattggacaatcctcccctttgagccatagttttgaggtggagttaagttca |
230 |
Q |
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| T |
6356718 |
ttatataggattggacaattctcccctttaagccatgattttgtggtggacttatgttca |
6356777 |
T |
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Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 230
Target Start/End: Complemental strand, 16928942 - 16928876
Alignment:
| Q |
164 |
tgagcgcttatataggattggacaatcctcccctttgagccatagttttgaggtggagttaagttca |
230 |
Q |
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| T |
16928942 |
tgagggcttatataggattggccaaccctcccttttgagccatgattttcaggtggagttaggttca |
16928876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 225
Target Start/End: Complemental strand, 3745677 - 3745585
Alignment:
| Q |
133 |
gagtctcacatcaggtgtcatgaacctggtgtgagcgcttatataggattggacaatcctcccctttgagccatagttttgaggtggagttaa |
225 |
Q |
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| T |
3745677 |
gagtctcacattaggagtcatgaccgttgtgagagggtttatatagaattagacaatccttccatttgagccatgtttttgagatggagttaa |
3745585 |
T |
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Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 189
Target Start/End: Complemental strand, 17250880 - 17250843
Alignment:
| Q |
152 |
atgaacctggtgtgagcgcttatataggattggacaat |
189 |
Q |
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| T |
17250880 |
atgaacctggtgtgagggcttatataggattgggcaat |
17250843 |
T |
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