View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5584-Insertion-4 (Length: 786)
Name: NF5584-Insertion-4
Description: NF5584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5584-Insertion-4 |
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Alignment Details
Target: chr1 (Bit Score: 600; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 600; E-Value: 0
Query Start/End: Original strand, 8 - 785
Target Start/End: Complemental strand, 42969084 - 42968308
Alignment:
| Q |
8 |
ggatgaccaaagttagacccagatgggattaccattggtaagtccaatatatgtgatgaaaagttatatatgcatgcctataaattagatttactcaggt |
107 |
Q |
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| T |
42969084 |
ggatgaccaaagttagacccagatgggattaccattggtaagtccaatatatgtgatcaaaagttatatatgcatgcctataaattagatttactcaggt |
42968985 |
T |
|
| Q |
108 |
ttttatatttgttagagttacaaatttttgcagttcacatgcttaattacataattattgataagcttatggacaaagttgcaatttttttaaataccnn |
207 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42968984 |
ttttatatttgttagagttacaaatttttgtagttcacatgcttaattacataattattgataagcttatggacaaagttgcaatttttttaaatacctt |
42968885 |
T |
|
| Q |
208 |
nnnnnnnnnnnaaggattttaatacatatttaaaaaccccaagtagtttaatgtcattgaaaaaacatcttttttgtaaaggggatcaatcaatagtgtt |
307 |
Q |
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| T |
42968884 |
ttttttttg----ggattttaatacatatttaaaaaccccaagtagtttaatgtcattgaaaaaacatcctttttgtaaaggggatcaatcaatagtgtt |
42968789 |
T |
|
| Q |
308 |
ctccatttctccgtctcatgacacgaacccagaccnnnnnnnggtgtaggtgaagcgtcttaccaactaagttgagcttcattgtcaatttttaatatta |
407 |
Q |
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| T |
42968788 |
ctccatttctccgtctcatgacatgaacccagacctttttttggtgtaggtgaagcgtcttaccaactaagttgagcttcattgtcaatttttaatatta |
42968689 |
T |
|
| Q |
408 |
attaagaaaataaacttattaggctgaatatttattggccaaagtataacnnnnnnnnnncaaaatggcnnnnnnntatttgaaatgatctaaattgggt |
507 |
Q |
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| T |
42968688 |
attaagaaaataaacttattaggctgaatatttattggccaaagtataacttttttttt-caaaatggcaaaaaaatatttgaaatgatctaaattgggt |
42968590 |
T |
|
| Q |
508 |
attacctttacttttgccacatggaattgggatttggagggaactttatacaagaaccaagaaatggtaaaaataaatcatacacaagatgctcaatatg |
607 |
Q |
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| T |
42968589 |
attacctttacttttgccacatggaattgggatttggagggaactttatacaagaaccaagaaatggtaaaaataaatcatacacaagatgctcaatatg |
42968490 |
T |
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| Q |
608 |
actgactgttatgtgcttttttcaacagttggagatggttgcatgacagaaaagaacagctttattagcagatatgctcaatcatccatgcttgggttgg |
707 |
Q |
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| T |
42968489 |
actgattgttatgtgcttttttcaacagttggagatggttgcatgacaggaaagaacagctttattagcagatatgctcaaccatccatgcttgggttgg |
42968390 |
T |
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| Q |
708 |
gtgggtgctccatggattgt-----gacaattcactagttccacagtgtatgggtattggacataaaactgaatgtctcaagg |
785 |
Q |
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| T |
42968389 |
gtgggtgctccatggattgtgacatgacaattcactagttccacagtgtat-ggtattggacataaaactgaatgtctcaagg |
42968308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 356 - 395
Target Start/End: Original strand, 36815804 - 36815843
Alignment:
| Q |
356 |
ggtgaagcgtcttaccaactaagttgagcttcattgtcaa |
395 |
Q |
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| T |
36815804 |
ggtgaagcgtcttaccaactaagttgcacttcattgtcaa |
36815843 |
T |
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