View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5584-Insertion-5 (Length: 536)
Name: NF5584-Insertion-5
Description: NF5584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5584-Insertion-5 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 8 - 536
Target Start/End: Complemental strand, 23368767 - 23368246
Alignment:
| Q |
8 |
agatgcactaatttataagcataaaaataatttaatgtcttactgccagaaggaacaatttcaatgttcgtaatgttggatagcggacttctttgtaagg |
107 |
Q |
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| T |
23368767 |
agatgcactaatttataagcataaaaataatttaatgtcttactgccagaaggaacatattcaatgttcgtaatgttggatagcggacttctttgtaagg |
23368668 |
T |
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| Q |
108 |
ttattggttgagatgattctgccaccttcctcttgcacaaaatggtatgatttagtgttgatggaactgttaaaatattatcttagtatgtcaatgatta |
207 |
Q |
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| T |
23368667 |
ttattggttgagatga------caccttcctcttgcacaaaatggtatgacttagtgttgatggaactgttaaaatattatcatagtatgtcaatgatta |
23368574 |
T |
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| Q |
208 |
aaatatgtaagtgtgagtccaatcttgcagattaagaatattgattcagacatataaataactcacatgaattcaaagaagttagagacgggttaattat |
307 |
Q |
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| T |
23368573 |
aaatatgtaagtgtgagtccaatcttgcagattaagaatattgattcagacatataaataactcacatgaattcatagaagttagagacgggttaattat |
23368474 |
T |
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| Q |
308 |
tgattcaaatgatctcctcgtttcagattttgaatcatttgcttgctctatatatgacaatgcctcacttgaatctacattgtagcaacaataattataa |
407 |
Q |
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| T |
23368473 |
tgattcagatgatctcctcgtttctgattttgaatcatttgcttgctctatagatgacaatgcctcacttgaatctacattgtagcaacaataattataa |
23368374 |
T |
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| Q |
408 |
aacatnnnnnnnnnncctttgaattggtttggccatacttcaacttggaagactattaaattttgtaggcaaaatcacatgctatataagtaccatttat |
507 |
Q |
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| T |
23368373 |
aaca-aaaaaaaaaacctttgaattggtttggccatacttcaacttggaagactattaaattttgtaggcaaaatcacatgctatataagtaccatttat |
23368275 |
T |
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| Q |
508 |
caatggtgagatatgattcctttgtgcct |
536 |
Q |
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| T |
23368274 |
caatggtgagataggattcttttgtgcct |
23368246 |
T |
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