View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5584-Insertion-6 (Length: 405)

Name: NF5584-Insertion-6
Description: NF5584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5584-Insertion-6
NF5584-Insertion-6
[»] chr8 (17 HSPs)
chr8 (8-405)||(10069536-10069928)
chr8 (8-84)||(39484735-39484810)
chr8 (8-83)||(6906452-6906527)
chr8 (9-78)||(14148403-14148472)
chr8 (8-60)||(7765976-7766027)
chr8 (7-85)||(31212462-31212540)
chr8 (8-85)||(6906264-6906340)
chr8 (8-85)||(10070038-10070115)
chr8 (8-85)||(29242432-29242508)
chr8 (16-85)||(37037290-37037358)
chr8 (21-85)||(15229616-15229680)
chr8 (14-85)||(29242857-29242927)
chr8 (8-59)||(36874336-36874387)
chr8 (15-85)||(20691274-20691343)
chr8 (16-85)||(5879875-5879944)
chr8 (9-85)||(8791887-8791963)
chr8 (8-60)||(14148864-14148916)
[»] chr6 (13 HSPs)
chr6 (8-85)||(31298724-31298801)
chr6 (8-78)||(14365107-14365176)
chr6 (25-85)||(12290165-12290224)
chr6 (21-87)||(30519679-30519744)
chr6 (8-85)||(403307-403383)
chr6 (8-85)||(31298903-31298980)
chr6 (8-84)||(7359598-7359674)
chr6 (8-83)||(13340445-13340520)
chr6 (16-57)||(19045077-19045118)
chr6 (21-78)||(24704314-24704371)
chr6 (21-86)||(34637424-34637488)
chr6 (24-60)||(5039407-5039443)
chr6 (37-85)||(12289980-12290028)
[»] chr7 (16 HSPs)
chr7 (8-88)||(12821176-12821256)
chr7 (14-85)||(3555365-3555436)
chr7 (8-78)||(7760776-7760846)
chr7 (8-77)||(47741036-47741105)
chr7 (15-86)||(29635234-29635304)
chr7 (8-87)||(31198476-31198555)
chr7 (17-88)||(8129876-8129946)
chr7 (8-83)||(20165020-20165095)
chr7 (9-87)||(15330027-15330105)
chr7 (15-61)||(23797230-23797276)
chr7 (8-78)||(31172354-31172424)
chr7 (14-78)||(31198306-31198369)
chr7 (21-85)||(35054445-35054509)
chr7 (32-85)||(19105457-19105510)
chr7 (37-85)||(21657297-21657345)
chr7 (25-69)||(24125360-24125404)
[»] chr2 (14 HSPs)
chr2 (8-85)||(18509497-18509574)
chr2 (8-84)||(980920-980995)
chr2 (8-88)||(20972401-20972481)
chr2 (8-84)||(37897731-37897807)
chr2 (21-83)||(16127920-16127982)
chr2 (24-86)||(25330559-25330621)
chr2 (8-78)||(39786496-39786565)
chr2 (8-88)||(981096-981175)
chr2 (22-85)||(12874680-12874743)
chr2 (14-61)||(37897599-37897646)
chr2 (15-85)||(4921349-4921419)
chr2 (33-83)||(16333353-16333403)
chr2 (21-87)||(32945610-32945676)
chr2 (8-85)||(43130322-43130398)
[»] chr1 (18 HSPs)
chr1 (8-85)||(14760052-14760129)
chr1 (8-83)||(22679505-22679580)
chr1 (15-78)||(20171396-20171458)
chr1 (25-85)||(14759953-14760012)
chr1 (8-88)||(30748948-30749028)
chr1 (8-88)||(30770399-30770479)
chr1 (20-87)||(15393345-15393412)
chr1 (8-86)||(15393144-15393222)
chr1 (22-85)||(22679337-22679400)
chr1 (24-66)||(16706354-16706396)
chr1 (15-85)||(39255614-39255684)
chr1 (24-69)||(10556039-10556084)
chr1 (21-78)||(23485864-23485921)
chr1 (20-61)||(30749131-30749172)
chr1 (20-61)||(30770582-30770623)
chr1 (33-78)||(32800328-32800373)
chr1 (8-85)||(35294333-35294410)
chr1 (38-78)||(39785227-39785267)
[»] chr3 (11 HSPs)
chr3 (8-84)||(30430271-30430347)
chr3 (8-83)||(2928096-2928171)
chr3 (8-85)||(30172071-30172148)
chr3 (21-85)||(4304339-4304403)
chr3 (8-61)||(44094175-44094229)
chr3 (16-85)||(4304143-4304212)
chr3 (21-87)||(25799514-25799579)
chr3 (21-78)||(4475112-4475169)
chr3 (37-78)||(30430675-30430716)
chr3 (17-70)||(35547198-35547251)
chr3 (9-85)||(43907899-43907974)
[»] chr5 (14 HSPs)
chr5 (8-83)||(22297764-22297839)
chr5 (7-85)||(29673291-29673368)
chr5 (16-78)||(29673725-29673787)
chr5 (20-83)||(22297953-22298016)
chr5 (37-87)||(2846571-2846621)
chr5 (20-85)||(3935965-3936030)
chr5 (16-85)||(24490694-24490762)
chr5 (8-84)||(25905959-25906035)
chr5 (37-84)||(2858411-2858458)
chr5 (8-61)||(12272526-12272579)
chr5 (21-78)||(13657556-13657613)
chr5 (17-69)||(16939827-16939879)
chr5 (17-57)||(31125763-31125803)
chr5 (25-69)||(37978650-37978694)
[»] chr4 (13 HSPs)
chr4 (8-86)||(17430712-17430790)
chr4 (8-87)||(32186646-32186724)
chr4 (8-77)||(17431139-17431208)
chr4 (16-85)||(28687461-28687530)
chr4 (14-85)||(54164651-54164722)
chr4 (25-75)||(32185291-32185341)
chr4 (7-85)||(34665156-34665234)
chr4 (8-85)||(7513527-7513604)
chr4 (24-69)||(2514310-2514355)
chr4 (15-84)||(17250463-17250532)
chr4 (14-83)||(53343707-53343776)
chr4 (24-60)||(14598571-14598607)
chr4 (24-60)||(44917504-44917540)
[»] scaffold0025 (1 HSPs)
scaffold0025 (21-85)||(64017-64081)
[»] scaffold0328 (1 HSPs)
scaffold0328 (8-87)||(11631-11710)
[»] scaffold0063 (1 HSPs)
scaffold0063 (24-69)||(52092-52137)
[»] scaffold0005 (1 HSPs)
scaffold0005 (24-60)||(218771-218807)


Alignment Details
Target: chr8 (Bit Score: 303; Significance: 1e-170; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 8 - 405
Target Start/End: Complemental strand, 10069928 - 10069536
Alignment:
Q  8 caaaatcctaagaaatattttagagggattaaaattaaatgttggtatatttagtgggaccatttacttatgtaacccaatcaatgctttctaagtttat 107  Q
    |||||||||||  |||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  10069928 caaaatcctaaagaatattttagaggggttaaaattaaatgttggtacatttagtgggaacatttacttatgtaacccaatcaatgctttctaagtttat 10069829  T
Q  108 atgaacatcaaatatatatataccaactgatgctttctaaatttatataataacatcaaaagtaaataaatggagagagcattttattttgcatgtaaat 207  Q
    ||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10069828 atgaacatcaaatatatata--ccaattgatgctttctaaatttatataataacatcaaaagtaaataaatggagagagcattttattttgcatgtaaat 10069731  T
Q  208 gagcaaacaacgatttatttgtcgtgtannnnnnnactcactgacataagactatcatcacactgtctacgtcatttatgctctttccctttc---tctt 304  Q
    |||||||||| |||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||   ||||    
T  10069730 gagcaaacaatgatttatttgtcgtgtacc------ctcactgacataagactatcatcacactgtctacgtcatttacgctctttccctttctcttctt 10069637  T
Q  305 cttcttctaatactcacatcaacaagtaaccatagaaactctttcttaacaatgctgcatgcaatatattctttacttttatgagttttaaacccttcgt 404  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||    
T  10069636 cttcttctaatactcacatcaacaagtaaccatagaaactctttcttaacaatgttgcatgcaacatattctttacttttatgagttttaaactcttcgt 10069537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 8 - 84
Target Start/End: Original strand, 39484735 - 39484810
Alignment:
Q  8 caaaatcctaagaaatattttagagggattaaaattaaatgttggtatatttagtgggaccatttacttatgtaacc 84  Q
    ||||||||||||||||||||||| | ||||||||  |||||||| ||||||||| || ||||||||||||| |||||    
T  39484735 caaaatcctaagaaatattttagggagattaaaa-aaaatgttgatatatttaggggaaccatttacttatttaacc 39484810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 6906452 - 6906527
Alignment:
Q  8 caaaatcctaagaaatattttagagggattaaaattaaatgttggtatatttagtgggaccatttacttatgtaac 83  Q
    ||||| ||||| ||||||||||  |||| |||||| |||||||||||||||||| |||||| ||||||||| ||||    
T  6906452 caaaagcctaaaaaatattttatggggactaaaatcaaatgttggtatatttagggggaccgtttacttatttaac 6906527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 78
Target Start/End: Complemental strand, 14148472 - 14148403
Alignment:
Q  9 aaaatcctaagaaatattttagagggattaaaattaaatgttggtatatttagtgggaccatttacttat 78  Q
    |||| |||||||||||||||||  ||| |||||| |||||||| ||||||||| ||||||| ||||||||    
T  14148472 aaaaacctaagaaatattttaggaggactaaaatcaaatgttgatatatttagggggaccacttacttat 14148403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 7766027 - 7765976
Alignment:
Q  8 caaaatcctaagaaatattttagagggattaaaattaaatgttggtatattta 60  Q
    ||||||||||||||||||||||| ||| | |||||||||||||||||||||||    
T  7766027 caaaatcctaagaaatattttagggggct-aaaattaaatgttggtatattta 7765976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 31212462 - 31212540
Alignment:
Q  7 acaaaatcctaagaaatattttagagggattaaaattaaatgttggtatatttagtgggaccatttacttatgtaaccc 85  Q
    |||||| |||||  |||||||||  |||| |||||| |||||||||||||||||| | ||| |||||||||| ||||||    
T  31212462 acaaaaacctaaagaatattttatggggactaaaatcaaatgttggtatatttagggagactatttacttatttaaccc 31212540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 8 - 85
Target Start/End: Complemental strand, 6906340 - 6906264
Alignment:
Q  8 caaaatcctaagaaatattttagagggattaaaattaaatgttggtatatttagtgggaccatttacttatgtaaccc 85  Q
    ||||| |||||| |||||||||  |||| |||| | |||||||||||||||||| ||||| |||||||||| ||||||    
T  6906340 caaaagcctaaggaatattttatggggactaaa-tcaaatgttggtatatttagggggactatttacttatttaaccc 6906264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 8 - 85
Target Start/End: Original strand, 10070038 - 10070115
Alignment:
Q  8 caaaatcctaagaaatattttagagggattaaaattaaatgttggtatatttagtgggaccatttacttatgtaaccc 85  Q
    ||||| ||||| |||||||||||  |||||||||| |||| ||||||||||||| || || |||| ||||| ||||||    
T  10070038 caaaaacctaaaaaatattttaggaggattaaaataaaatattggtatatttaggggaactatttgcttatttaaccc 10070115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 8 - 85
Target Start/End: Complemental strand, 29242508 - 29242432
Alignment:
Q  8 caaaatcctaagaaatattttagagggattaaaattaaatgttggtatatttagtgggaccatttacttatgtaaccc 85  Q
    ||||| |||||  ||||||||||||||| |||||| |||||||||||| ||||| ||||| | |||||||| ||||||    
T  29242508 caaaagcctaatgaatattttagagggactaaaataaaatgttggtat-tttagagggacaagttacttatttaaccc 29242432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 37037290 - 37037358
Alignment:
Q  16 taagaaatattttagagggattaaaattaaatgttggtatatttagtgggaccatttacttatgtaaccc 85  Q
    |||| ||||||||||||||| |||||| ||||||||| ||||||||   |||||||||||||| ||||||    
T  37037290 taaggaatattttagagggactaaaatcaaatgttggaatatttag-aagaccatttacttatttaaccc 37037358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 15229680 - 15229616
Alignment:
Q  21 aatattttagagggattaaaattaaatgttggtatatttagtgggaccatttacttatgtaaccc 85  Q
    ||||||||| ||||| |||||| |||||||||||||||||  || || |||||||||| ||||||    
T  15229680 aatattttatagggactaaaataaaatgttggtatatttaagggaactatttacttatttaaccc 15229616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 14 - 85
Target Start/End: Original strand, 29242857 - 29242927
Alignment:
Q  14 cctaagaaatattttagagggattaaaattaaatgttggtatatttagtgggaccatttacttatgtaaccc 85  Q
    |||||||||| ||||||||||| |||||| |||||||| ||  ||||| ||||| |||||||||| ||||||    
T  29242857 cctaagaaattttttagagggactaaaatcaaatgttgataattttag-gggacaatttacttatttaaccc 29242927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 36874387 - 36874336
Alignment:
Q  8 caaaatcctaagaaatattttagagggattaaaattaaatgttggtatattt 59  Q
    ||||| |||||| ||||||||||||| | |||||||||||||||| ||||||    
T  36874387 caaaaacctaaggaatattttagaggaactaaaattaaatgttggcatattt 36874336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 20691343 - 20691274
Alignment:
Q  15 ctaagaaatattttagagggattaaaattaaatgttggtatatttagtgggaccatttacttatgtaaccc 85  Q
    ||||| |||||||||| |||| |||||| |||| ||||||||||||  ||| |||||||||||| ||||||    
T  20691343 ctaaggaatattttagggggaataaaatcaaattttggtatattta-aggggccatttacttatttaaccc 20691274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 5879944 - 5879875
Alignment:
Q  16 taagaaatattttagagggattaaaattaaatgttggtatatttagtgggaccatttacttatgtaaccc 85  Q
    ||||||||||||||||  || |||||| |||| || |||||||||| | ||| |||||||||| ||||||    
T  5879944 taagaaatattttagaaagactaaaatcaaatattagtatatttagggagactatttacttatttaaccc 5879875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 85
Target Start/End: Original strand, 8791887 - 8791963
Alignment:
Q  9 aaaatcctaagaaatattttagagggattaaaattaaatgttggtatatttagtgggaccatttacttatgtaaccc 85  Q
    |||| ||||||||||||||||   |||||||||| ||||||| |||||||||   | || |||||||||| ||||||    
T  8791887 aaaaacctaagaaatattttatgaggattaaaatcaaatgttagtatatttaagagaactatttacttatttaaccc 8791963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 14148864 - 14148916
Alignment:
Q  8 caaaatcctaagaaatattttagagggattaaaattaaatgttggtatattta 60  Q
    ||||| ||||| |||||| |||| |||| |||||| |||||||||||||||||    
T  14148864 caaaagcctaaaaaatatgttagggggactaaaatcaaatgttggtatattta 14148916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 8 - 85
Target Start/End: Complemental strand, 31298801 - 31298724
Alignment:
Q  8 caaaatcctaagaaatattttagagggattaaaattaaatgttggtatatttagtgggaccatttacttatgtaaccc 85  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| ||||  | || ||||||||||| ||||||    
T  31298801 caaaagcctaagaaatattttagagggattaaaattaaatgttggtatttttaaagagatcatttacttatttaaccc 31298724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 8 - 78
Target Start/End: Original strand, 14365107 - 14365176
Alignment:
Q  8 caaaatcctaagaaatattttagagggattaaaattaaatgttggtatatttagtgggaccatttacttat 78  Q
    |||||| ||||||||||||||||| ||| |||||| |||||||| |||| ||| |||||||||||||||||    
T  14365107 caaaattctaagaaatattttagatggactaaaatcaaatgttgatata-ttactgggaccatttacttat 14365176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 25 - 85
Target Start/End: Original strand, 12290165 - 12290224
Alignment:
Q  25 ttttagagggattaaaattaaatgttggtatatttagtgggaccatttacttatgtaaccc 85  Q
    ||||||||| | ||||||||||||||||||||||||| |||| ||||||||||| ||||||    
T  12290165 ttttagaggaactaaaattaaatgttggtatatttag-gggatcatttacttatttaaccc 12290224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 30519744 - 30519679
Alignment:
Q  21 aatattttagagggattaaaattaaatgttggtatatttagtgggaccatttacttatgtaacccaa 87  Q
    ||||||||| || ||||||||| ||||||||||||||||||   |||||||||||||| ||||||||    
T  30519744 aatattttaaagagattaaaatcaaatgttggtatatttag-acgaccatttacttatttaacccaa 30519679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 8 - 85
Target Start/End: Complemental strand, 403383 - 403307
Alignment:
Q  8 caaaatcctaagaaatattttagagggattaaaattaaatgttggtatatttagtgggaccatttacttatgtaaccc 85  Q
    ||||| |||||  ||||||||||||| ||||||||||||| || || ||||||| ||||| |||||||||| ||||||    
T  403383 caaaaacctaaagaatattttagagg-attaaaattaaatattagtttatttagagggactatttacttatttaaccc 403307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 8 - 85
Target Start/End: Original strand, 31298903 - 31298980
Alignment:
Q  8 caaaatcctaagaaatattttagagggattaaaattaaatgttggtatatttagtgggaccatttacttatgtaaccc 85  Q
    ||||| |||||  ||||||||||||| | |||||| |||| ||||||||||||  ||||| |||||||||| ||||||    
T  31298903 caaaagcctaaagaatattttagaggaactaaaatcaaatattggtatatttaaagggactatttacttatttaaccc 31298980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 84
Target Start/End: Original strand, 7359598 - 7359674
Alignment:
Q  8 caaaatcctaagaaatattttagagggattaaaattaaatgttggtatatttagtgggaccatttacttatgtaacc 84  Q
    ||||| |||||  |||||||||| |||| |||||| |||||||||||||||||| | ||| | |||||||| |||||    
T  7359598 caaaagcctaaataatattttagggggagtaaaatcaaatgttggtatatttagggcgacgagttacttatttaacc 7359674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 13340520 - 13340445
Alignment:
Q  8 caaaatcctaagaaatattttagagggattaaaattaaatgttggtatatttagtgggaccatttacttatgtaac 83  Q
    ||||| |||||  ||| ||||| ||||| |||||| |||||||||||||||||  ||||| |||||||||| ||||    
T  13340520 caaaagcctaaagaatgttttatagggactaaaatcaaatgttggtatatttaaggggactatttacttatttaac 13340445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 57
Target Start/End: Original strand, 19045077 - 19045118
Alignment:
Q  16 taagaaatattttagagggattaaaattaaatgttggtatat 57  Q
    |||||||||||||||| ||| |||||| ||||||||||||||    
T  19045077 taagaaatattttagaaggactaaaatcaaatgttggtatat 19045118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 24704371 - 24704314
Alignment:
Q  21 aatattttagagggattaaaattaaatgttggtatatttagtgggaccatttacttat 78  Q
    |||||||||| | || |||||| |||| ||||||||||||| || |||||||||||||    
T  24704371 aatattttagggagactaaaatcaaatattggtatatttagaggaaccatttacttat 24704314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 86
Target Start/End: Complemental strand, 34637488 - 34637424
Alignment:
Q  21 aatattttagagggattaaaattaaatgttggtatatttagtgggaccatttacttatgtaaccca 86  Q
    |||||||||| |||| |||||| |||||||||||||||||  | ||| |||||||||| |||||||    
T  34637488 aatattttag-gggactaaaatcaaatgttggtatatttatggagactatttacttatttaaccca 34637424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 60
Target Start/End: Original strand, 5039407 - 5039443
Alignment:
Q  24 attttagagggattaaaattaaatgttggtatattta 60  Q
    ||||||||||||||||||| ||| |||||||||||||    
T  5039407 attttagagggattaaaataaaaagttggtatattta 5039443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 85
Target Start/End: Complemental strand, 12290028 - 12289980
Alignment:
Q  37 taaaattaaatgttggtatatttagtgggaccatttacttatgtaaccc 85  Q
    |||||| |||||||||||||||||| | ||| |||||||||| ||||||    
T  12290028 taaaatcaaatgttggtatatttagggagactatttacttatttaaccc 12289980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 12821256 - 12821176
Alignment:
Q  8 caaaatcctaagaaatattttagagggattaaaattaaatgttggtatatttagtgggaccatttacttatgtaacccaat 88  Q
    ||||| ||||| ||||||||||| ||||||||||| ||| |||||||||||||  |||||||||||||||| |||||||||    
T  12821256 caaaagcctaaaaaatattttagggggattaaaatcaaacgttggtatatttaaggggaccatttacttatttaacccaat 12821176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 14 - 85
Target Start/End: Complemental strand, 3555436 - 3555365
Alignment:
Q  14 cctaagaaatattttagagggattaaaattaaatgttggtatatttagtgggaccatttacttatgtaaccc 85  Q
    ||||||||||||||||| |||| |||||| |||||||||||||||||| |||||||||| ||||| ||||||    
T  3555436 cctaagaaatattttagggggactaaaatcaaatgttggtatatttagggggaccatttgcttatttaaccc 3555365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 78
Target Start/End: Original strand, 7760776 - 7760846
Alignment:
Q  8 caaaatcctaagaaatattttagagggattaaaattaaatgttggtatatttagtgggaccatttacttat 78  Q
    ||||| |||||||||||||||| ||||| |||||| |||||||||||||||||| || || ||||||||||    
T  7760776 caaaagcctaagaaatattttatagggactaaaatcaaatgttggtatatttaggggaactatttacttat 7760846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 47741036 - 47741105
Alignment:
Q  8 caaaatcctaagaaatattttagagggattaaaattaaatgttggtatatttagtgggaccatttactta 77  Q
    ||||| ||||||||||||||| | |||| | ||||||||||||||||||||||  |||||||||||||||    
T  47741036 caaaagcctaagaaatatttttgggggactgaaattaaatgttggtatatttatggggaccatttactta 47741105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 86
Target Start/End: Complemental strand, 29635304 - 29635234
Alignment:
Q  15 ctaagaaatattttagagggattaaaattaaatgttggtatatttagtgggaccatttacttatgtaaccca 86  Q
    ||||| |||||||||| |||| |||||| |||||||| ||||||||| |||||||||||||||| |||||||    
T  29635304 ctaaggaatattttag-gggactaaaatcaaatgttgatatatttagggggaccatttacttatttaaccca 29635234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 87
Target Start/End: Original strand, 31198476 - 31198555
Alignment:
Q  8 caaaatcctaagaaatattttagagggattaaaattaaatgttggtatatttagtgggaccatttacttatgtaacccaa 87  Q
    ||||| |||||||||||||||||  | | |||||| |||||||||||||||||  ||||| |||||||||| ||||||||    
T  31198476 caaaagcctaagaaatattttaggagaactaaaatcaaatgttggtatatttaaagggactatttacttatttaacccaa 31198555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 8129946 - 8129876
Alignment:
Q  17 aagaaatattttagagggattaaaattaaatgttggtatatttagtgggaccatttacttatgtaacccaat 88  Q
    ||||||||||||| | |||||||||| ||||||||||| |||||| | || ||||||||||| |||||||||    
T  8129946 aagaaatattttaaaaggattaaaatcaaatgttggtagatttag-gagatcatttacttatttaacccaat 8129876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 20165020 - 20165095
Alignment:
Q  8 caaaatcctaagaaatattttagagggattaaaattaaatgttggtatatttagtgggaccatttacttatgtaac 83  Q
    ||||| |||||  ||||||||||||||| |||||| ||||||||||||||||||   |||||||| ||||| ||||    
T  20165020 caaaaacctaatgaatattttagagggactaaaatcaaatgttggtatatttaggaagaccatttccttatttaac 20165095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 87
Target Start/End: Original strand, 15330027 - 15330105
Alignment:
Q  9 aaaatcctaagaaatattttagagggattaaaattaaatgttggtatatttagtgggaccatttacttatgtaacccaa 87  Q
    |||| ||||||||||| ||||   ||||||||||||||||| | |||||||||  ||||||| ||||||| ||||||||    
T  15330027 aaaagcctaagaaataatttaagaggattaaaattaaatgtggatatatttaggaggaccatatacttatttaacccaa 15330105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 61
Target Start/End: Original strand, 23797230 - 23797276
Alignment:
Q  15 ctaagaaatattttagagggattaaaattaaatgttggtatatttag 61  Q
    ||||||||||||||||||||| |||||| |||||||| |||||||||    
T  23797230 ctaagaaatattttagagggactaaaatcaaatgttgatatatttag 23797276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 78
Target Start/End: Original strand, 31172354 - 31172424
Alignment:
Q  8 caaaatcctaagaaatattttagagggattaaaattaaatgttggtatatttagtgggaccatttacttat 78  Q
    ||||| ||||| |||||||||||  |||||||||| ||||||| |||||||||  |||| |||||||||||    
T  31172354 caaaaacctaaaaaatattttaggaggattaaaatcaaatgtttgtatatttaaagggatcatttacttat 31172424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 31198369 - 31198306
Alignment:
Q  14 cctaagaaatattttagagggattaaaattaaatgttggtatatttagtgggaccatttacttat 78  Q
    ||||| |||||||||||| ||| |||||| |||||||||||||||||| || || ||||||||||    
T  31198369 cctaaaaaatattttagaaggactaaaatcaaatgttggtatatttag-ggaactatttacttat 31198306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 35054509 - 35054445
Alignment:
Q  21 aatattttagagggattaaaattaaatgttggtatatttagtgggaccatttacttatgtaaccc 85  Q
    ||||||||| |||||| ||||||||||||| ||||||||||  | || |||||||||| ||||||    
T  35054509 aatattttaaagggatcaaaattaaatgttagtatatttagaagaactatttacttatttaaccc 35054445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 19105457 - 19105510
Alignment:
Q  32 gggattaaaattaaatgttggtatatttagtgggaccatttacttatgtaaccc 85  Q
    |||| |||||| ||| |||||||||||||| ||||| |||||||||| ||||||    
T  19105457 gggactaaaatcaaaagttggtatatttagggggactatttacttatttaaccc 19105510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 85
Target Start/End: Complemental strand, 21657345 - 21657297
Alignment:
Q  37 taaaattaaatgttggtatatttagtgggaccatttacttatgtaaccc 85  Q
    |||| |||||||||| |||||||||  ||||||||||||||| ||||||    
T  21657345 taaagttaaatgttgatatatttaggaggaccatttacttatttaaccc 21657297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 24125404 - 24125360
Alignment:
Q  25 ttttagagggattaaaattaaatgttggtatatttagtgggacca 69  Q
    |||||||| |||||||| | || ||||||||||||||||||||||    
T  24125404 ttttagagtgattaaaaatgaaagttggtatatttagtgggacca 24125360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 8 - 85
Target Start/End: Complemental strand, 18509574 - 18509497
Alignment:
Q  8 caaaatcctaagaaatattttagagggattaaaattaaatgttggtatatttagtgggaccatttacttatgtaaccc 85  Q
    ||||| || ||| ||||||||||||||| |||||| |||||||||||||||||| ||||||||||| |||| ||||||    
T  18509574 caaaaaccaaaggaatattttagagggactaaaatcaaatgttggtatatttagggggaccatttaattatttaaccc 18509497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 980995 - 980920
Alignment:
Q  8 caaaatcctaagaaatattttagagggattaaaattaaatgttggtatatttagtgggaccatttacttatgtaacc 84  Q
    ||||| |||||||||||||||||||| | |||||| |||||||| ||||||||  |||| ||||||||||| |||||    
T  980995 caaaagcctaagaaatattttagagg-actaaaatcaaatgttgatatatttaaagggatcatttacttatttaacc 980920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 20972401 - 20972481
Alignment:
Q  8 caaaatcctaagaaatattttagagggattaaaattaaatgttggtatatttagtgggaccatttacttatgtaacccaat 88  Q
    ||||| |||||||||||||||   |||| |||||| |||||||| ||||||||  ||||||||| |||||| |||||||||    
T  20972401 caaaaacctaagaaatattttttggggactaaaatcaaatgttgatatatttaaagggaccattcacttatttaacccaat 20972481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 8 - 84
Target Start/End: Original strand, 37897731 - 37897807
Alignment:
Q  8 caaaatcctaagaaatattttagagggattaaaattaaatgttggtatatttagtgggaccatttacttatgtaacc 84  Q
    ||||| |||||||||||||||||  ||| |||||  |||||||||||||||||||| |||  ||||||||| |||||    
T  37897731 caaaagcctaagaaatattttaggaggactaaaacaaaatgttggtatatttagtgagactttttacttatttaacc 37897807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 83
Target Start/End: Complemental strand, 16127982 - 16127920
Alignment:
Q  21 aatattttagagggattaaaattaaatgttggtatatttagtgggaccatttacttatgtaac 83  Q
    ||||||||||  ||| ||||||||||||||||||||||||  ||||| |||||||||| ||||    
T  16127982 aatattttaggaggactaaaattaaatgttggtatatttaaggggactatttacttatttaac 16127920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 86
Target Start/End: Complemental strand, 25330621 - 25330559
Alignment:
Q  24 attttagagggattaaaattaaatgttggtatatttagtgggaccatttacttatgtaaccca 86  Q
    |||||||||||| |||||| |||||||| | ||||||| ||||| |||||||||| |||||||    
T  25330621 attttagagggactaaaatcaaatgttgatgtatttagggggactatttacttatttaaccca 25330559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 78
Target Start/End: Original strand, 39786496 - 39786565
Alignment:
Q  8 caaaatcctaagaaatattttagagggattaaaattaaatgttggtatatttagtgggaccatttacttat 78  Q
    |||||| |||| ||||||||||| |||| |||||||||||| ||||||||||| || ||| ||||||||||    
T  39786496 caaaattctaaaaaatattttagggggactaaaattaaatgctggtatattta-tgagactatttacttat 39786565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 981096 - 981175
Alignment:
Q  8 caaaatcctaagaaatattttagagggattaaaattaaatgttggtatatttagtgggaccatttacttatgtaacccaat 88  Q
    ||||| |||||  |||||||||| |||| |||||| |||||||||||||||||| | ||| |||||||||| ||| |||||    
T  981096 caaaagcctaaagaatattttag-gggactaaaatcaaatgttggtatatttagagagactatttacttatttaatccaat 981175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 12874743 - 12874680
Alignment:
Q  22 atattttagagggattaaaattaaatgttggtatatttagtgggaccatttacttatgtaaccc 85  Q
    |||||||| |||||  ||||| |||||||||||||||||| |  ||||||||||||| ||||||    
T  12874743 atattttaaagggaccaaaatcaaatgttggtatatttagggaaaccatttacttatttaaccc 12874680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 14 - 61
Target Start/End: Complemental strand, 37897646 - 37897599
Alignment:
Q  14 cctaagaaatattttagagggattaaaattaaatgttggtatatttag 61  Q
    |||||| ||||||||||||||| |||||| |||||||||| |||||||    
T  37897646 cctaaggaatattttagagggagtaaaatcaaatgttggtctatttag 37897599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 4921349 - 4921419
Alignment:
Q  15 ctaagaaatattttagagggattaaaattaaatgttggtatatttagtgggaccatttacttatgtaaccc 85  Q
    |||| ||||||||||  ||||||||||| |||||||| ||||||||| | ||| ||||| |||| ||||||    
T  4921349 ctaaaaaatattttaaggggattaaaatcaaatgttgatatatttagagagactatttatttatttaaccc 4921419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 16333353 - 16333403
Alignment:
Q  33 ggattaaaattaaatgttggtatatttagtgggaccatttacttatgtaac 83  Q
    ||||||||||||||||||||||||||||  |||||  ||||||||| ||||    
T  16333353 ggattaaaattaaatgttggtatatttaaggggactgtttacttatttaac 16333403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 32945676 - 32945610
Alignment:
Q  21 aatattttagagggattaaaattaaatgttggtatatttagtgggaccatttacttatgtaacccaa 87  Q
    |||||||||  |||| |||||| |||||||||||||||| | ||||| |||||| ||| ||||||||    
T  32945676 aatattttatggggactaaaatcaaatgttggtatattttgggggactatttacctatttaacccaa 32945610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 85
Target Start/End: Original strand, 43130322 - 43130398
Alignment:
Q  8 caaaatcctaagaaatattttagagggattaaaattaaatgttggtatatttagtgggaccatttacttatgtaaccc 85  Q
    ||||| |||||| || ||||| |||||| | |||| |||||| ||||||||||| | |||||||||||||| ||||||    
T  43130322 caaaagcctaaggaaaattttggagggactgaaatcaaatgt-ggtatatttagggagaccatttacttatttaaccc 43130398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 8 - 85
Target Start/End: Original strand, 14760052 - 14760129
Alignment:
Q  8 caaaatcctaagaaatattttagagggattaaaattaaatgttggtatatttagtgggaccatttacttatgtaaccc 85  Q
    ||||| ||||| ||||||||||| ||||||||||| |||||||||||||||||  |||| ||||||||||| ||||||    
T  14760052 caaaagcctaaaaaatattttagggggattaaaatcaaatgttggtatatttaaggggatcatttacttatttaaccc 14760129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 22679505 - 22679580
Alignment:
Q  8 caaaatcctaagaaatattttagagggattaaaattaaatgttggtatatttagtgggaccatttacttatgtaac 83  Q
    ||||| ||||| |||||||||||||||| |||||| |||||||||||||||||| |||| | ||||||||| ||||    
T  22679505 caaaaacctaacaaatattttagagggactaaaatcaaatgttggtatatttagggggatcgtttacttatttaac 22679580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 78
Target Start/End: Complemental strand, 20171458 - 20171396
Alignment:
Q  15 ctaagaaatattttagagggattaaaattaaatgttggtatatttagtgggaccatttacttat 78  Q
    ||||||||||||||||||||| |||||| ||||||||||||||| || | ||||||||||||||    
T  20171458 ctaagaaatattttagagggactaaaatcaaatgttggtatattaag-gagaccatttacttat 20171396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 25 - 85
Target Start/End: Complemental strand, 14760012 - 14759953
Alignment:
Q  25 ttttagagggattaaaattaaatgttggtatatttagtgggaccatttacttatgtaaccc 85  Q
    ||||||||||| |||||| ||||||||||||||||||   |||||||||||||||||||||    
T  14760012 ttttagagggactaaaatcaaatgttggtatatttag-acgaccatttacttatgtaaccc 14759953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 30749028 - 30748948
Alignment:
Q  8 caaaatcctaagaaatattttagagggattaaaattaaatgttggtatatttagtgggaccatttacttatgtaacccaat 88  Q
    ||||| |||||  |||||||||| |||| |||||| |||| || ||||||||||  ||||||||||||||| |||||||||    
T  30749028 caaaagcctaaagaatattttagggggactaaaatcaaatatttgtatatttaggaggaccatttacttatttaacccaat 30748948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 30770479 - 30770399
Alignment:
Q  8 caaaatcctaagaaatattttagagggattaaaattaaatgttggtatatttagtgggaccatttacttatgtaacccaat 88  Q
    ||||| |||||  |||||||||| |||| |||||| |||| || ||||||||||  ||||||||||||||| |||||||||    
T  30770479 caaaagcctaaagaatattttagggggactaaaatcaaatatttgtatatttaggaggaccatttacttatttaacccaat 30770399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 15393345 - 15393412
Alignment:
Q  20 aaatattttagagggattaaaattaaatgttggtatatttagtgggaccatttacttatgtaacccaa 87  Q
    ||||||||||| |||| | |||| |||||||||||||||| | |||||||||||||||| ||| ||||    
T  15393345 aaatattttagggggactgaaatcaaatgttggtatatttcgggggaccatttacttatttaatccaa 15393412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 15393222 - 15393144
Alignment:
Q  8 caaaatcctaagaaatattttagagggattaaaattaaatgttggtatatttagtg-ggaccatttacttatgtaaccca 86  Q
    ||||| |||||| |||||||||| ||||  |||||||||| ||||||||||| ||| |||| |||||||||| |||||||    
T  15393222 caaaagcctaaggaatattttagggggacgaaaattaaatattggtatattt-gtgaggactatttacttatttaaccca 15393144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 22679400 - 22679337
Alignment:
Q  22 atattttagagggattaaaattaaatgttggtatatttagtgggaccatttacttatgtaaccc 85  Q
    ||||||||| ||||||||||| | |||||| |||||| || ||||| |||||||||| ||||||    
T  22679400 atattttagggggattaaaatcatatgttgatatattcagagggactatttacttatttaaccc 22679337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 66
Target Start/End: Complemental strand, 16706396 - 16706354
Alignment:
Q  24 attttagagggattaaaattaaatgttggtatatttagtggga 66  Q
    |||||||||||| |||||| |||||||||||||||||| ||||    
T  16706396 attttagagggactaaaatcaaatgttggtatatttagaggga 16706354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 39255614 - 39255684
Alignment:
Q  15 ctaagaaatattttagagggattaaaattaaatgttggtatatttagtgggaccatttacttatgtaaccc 85  Q
    ||||||||||||||||||| |||||||| |||||||| || |||||   |||| ||||| |||| ||||||    
T  39255614 ctaagaaatattttagaggaattaaaatcaaatgttgataaatttaaaaggacaatttatttatttaaccc 39255684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 10556039 - 10556084
Alignment:
Q  24 attttagagggattaaaattaaatgttggtatatttagtgggacca 69  Q
    ||||||||||||||||||| ||| |||||||||||||  |||||||    
T  10556039 attttagagggattaaaatgaaaagttggtatatttatagggacca 10556084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 23485864 - 23485921
Alignment:
Q  21 aatattttagagggattaaaattaaatgttggtatatttagtgggaccatttacttat 78  Q
    ||||||||||||| |||||||| |||| ||||||| |||||  ||| |||||||||||    
T  23485864 aatattttagaggaattaaaatcaaattttggtatgtttaggaggatcatttacttat 23485921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 30749131 - 30749172
Alignment:
Q  20 aaatattttagagggattaaaattaaatgttggtatatttag 61  Q
    |||||||||||||| |||||||| |||||||| |||||||||    
T  30749131 aaatattttagaggaattaaaatcaaatgttgatatatttag 30749172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 30770582 - 30770623
Alignment:
Q  20 aaatattttagagggattaaaattaaatgttggtatatttag 61  Q
    |||||||||||||| |||||||| |||||||| |||||||||    
T  30770582 aaatattttagaggaattaaaatcaaatgttgatatatttag 30770623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 32800328 - 32800373
Alignment:
Q  33 ggattaaaattaaatgttggtatatttagtgggaccatttacttat 78  Q
    |||||||||| |||| ||| ||||||||||||||| ||||||||||    
T  32800328 ggattaaaatcaaatattgatatatttagtgggactatttacttat 32800373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 85
Target Start/End: Complemental strand, 35294410 - 35294333
Alignment:
Q  8 caaaatcctaagaaatattttagagggattaaaattaaatgttggtatatttagtgggaccatttacttatgtaaccc 85  Q
    ||||| ||| ||||||||||| || ||| |||||| |||||||| ||||||||  |||| |||||| |||| ||||||    
T  35294410 caaaagcctcagaaatattttcgatggactaaaatcaaatgttgatatatttaaagggatcatttaattatttaaccc 35294333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 78
Target Start/End: Complemental strand, 39785267 - 39785227
Alignment:
Q  38 aaaattaaatgttggtatatttagtgggaccatttacttat 78  Q
    |||||||||||||||||| ||||| ||||| ||||||||||    
T  39785267 aaaattaaatgttggtatttttagggggactatttacttat 39785227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 30430347 - 30430271
Alignment:
Q  8 caaaatcctaagaaatattttagagggattaaaattaaatgttggtatatttagtgggaccatttacttatgtaacc 84  Q
    ||||| |||||  ||||||||||||| | |||||| |||||||||||||||||| |||||||||||||||| |||||    
T  30430347 caaaagcctaaagaatattttagaggaactaaaatcaaatgttggtatatttagagggaccatttacttatttaacc 30430271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 2928171 - 2928096
Alignment:
Q  8 caaaatcctaagaaatattttagagggattaaaattaaatgttggtatatttagtgggaccatttacttatgtaac 83  Q
    ||||| |||||| || |||||||||||| || ||| ||||||||||||||||||  ||||||||||||||| ||||    
T  2928171 caaaagcctaaggaaaattttagagggactagaatcaaatgttggtatatttaggaggaccatttacttatttaac 2928096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 85
Target Start/End: Complemental strand, 30172148 - 30172071
Alignment:
Q  8 caaaatcctaagaaatattttagagggattaaaattaaatgttggtatatttagtgggaccatttacttatgtaaccc 85  Q
    ||||| |||||  |||||||||  |||| |||||| |||||||| ||||||||| |||||||||||||||| ||||||    
T  30172148 caaaaacctaaagaatattttaaggggactaaaatcaaatgttgatatatttagggggaccatttacttatttaaccc 30172071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 4304339 - 4304403
Alignment:
Q  21 aatattttagagggattaaaattaaatgttggtatatttagtgggaccatttacttatgtaaccc 85  Q
    ||||||||||||||| |||||| |||||||||||||||||| | ||  |||||||||| ||||||    
T  4304339 aatattttagagggactaaaatcaaatgttggtatatttagggagattatttacttatttaaccc 4304403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 44094229 - 44094175
Alignment:
Q  8 caaaatcctaagaaatattttagagggattaaaattaaatg-ttggtatatttag 61  Q
    ||||| |||||||||||||||||| |||||||||| ||||| |||||||||||||    
T  44094229 caaaagcctaagaaatattttagaaggattaaaatcaaatgtttggtatatttag 44094175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 4304212 - 4304143
Alignment:
Q  16 taagaaatattttagagggattaaaattaaatgttggtatatttagtgggaccatttacttatgtaaccc 85  Q
    |||||||||||||||  ||| |||||| |||||||||||||||||  ||||| ||||| |||| ||||||    
T  4304212 taagaaatattttaggaggactaaaatcaaatgttggtatatttaaggggacgatttatttatttaaccc 4304143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 25799514 - 25799579
Alignment:
Q  21 aatattttagagggattaaaattaaatgttggtatatttagtgggaccatttacttatgtaacccaa 87  Q
    ||||||||| || || ||||||||||||||||||||||||| ||   ||||||||||| ||||||||    
T  25799514 aatattttaaagagactaaaattaaatgttggtatatttag-ggagtcatttacttatttaacccaa 25799579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 4475169 - 4475112
Alignment:
Q  21 aatattttagagggattaaaattaaatgttggtatatttagtgggaccatttacttat 78  Q
    |||||||||| || |||||||| ||||||||||||||||||  ||||  |||||||||    
T  4475169 aatattttaggggaattaaaatcaaatgttggtatatttaggaggactttttacttat 4475112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 78
Target Start/End: Original strand, 30430675 - 30430716
Alignment:
Q  37 taaaattaaatgttggtatatttagtgggaccatttacttat 78  Q
    ||||||||||| ||| ||||||||| ||||||||||||||||    
T  30430675 taaaattaaatattgatatatttagggggaccatttacttat 30430716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 35547251 - 35547198
Alignment:
Q  17 aagaaatattttagagggattaaaattaaatgttggtatatttagtgggaccat 70  Q
    ||||||| ||||||||||| |||||| ||| |||||||||||||  ||||||||    
T  35547251 aagaaattttttagagggactaaaatgaaaagttggtatatttacagggaccat 35547198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 85
Target Start/End: Original strand, 43907899 - 43907974
Alignment:
Q  9 aaaatcctaagaaatattttagagggattaaaattaaatgttggtatatttagtgggaccatttacttatgtaaccc 85  Q
    |||| ||||| ||||||||||| |||| |||||| |||| || |||||||||  |||| ||||||||||| ||||||    
T  43907899 aaaaacctaaaaaatattttagggggactaaaatcaaatattagtatattta-agggatcatttacttatttaaccc 43907974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 22297839 - 22297764
Alignment:
Q  8 caaaatcctaagaaatattttagagggattaaaattaaatgttggtatatttagtgggaccatttacttatgtaac 83  Q
    ||||| ||||| |||||||||||||||| |||||| |||||||| ||||||||| ||||| |||||||||| ||||    
T  22297839 caaaaacctaaaaaatattttagagggactaaaatcaaatgttgatatatttagagggactatttacttatttaac 22297764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 29673368 - 29673291
Alignment:
Q  7 acaaaatcctaagaaatattttagagggattaaaattaaatgttggtatatttagtgggaccatttacttatgtaaccc 85  Q
    |||||||||||| |||||||||||  ||| |||||| |||||||||||||||||  |||||||||||||||| ||||||    
T  29673368 acaaaatcctaa-aaatattttaggaggactaaaatcaaatgttggtatatttaaggggaccatttacttatttaaccc 29673291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 29673725 - 29673787
Alignment:
Q  16 taagaaatattttagagggattaaaattaaatgttggtatatttagtgggaccatttacttat 78  Q
    |||||||||||||||||| | |||||| ||||||| |||||||||| || |||||||||||||    
T  29673725 taagaaatattttagaggaactaaaatcaaatgtttgtatatttaggggaaccatttacttat 29673787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 83
Target Start/End: Original strand, 22297953 - 22298016
Alignment:
Q  20 aaatattttagagggattaaaattaaatgttggtatatttagtgggaccatttacttatgtaac 83  Q
    ||||||||||  |||| |||||| ||||||| |||||||||| |||||||||||||||| ||||    
T  22297953 aaatattttaaggggactaaaatcaaatgttagtatatttagggggaccatttacttatttaac 22298016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 87
Target Start/End: Complemental strand, 2846621 - 2846571
Alignment:
Q  37 taaaattaaatgttggtatatttagtgggaccatttacttatgtaacccaa 87  Q
    |||||| |||||||| ||||||||| |||||||||||||||| ||||||||    
T  2846621 taaaatcaaatgttgatatatttagggggaccatttacttatttaacccaa 2846571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 3936030 - 3935965
Alignment:
Q  20 aaatattttagagggattaaaattaaatgttggtatatttagtgggaccatttacttatgtaaccc 85  Q
    |||||||||||||||||| |||| |||| ||| |||||||||  | ||||||||||||| ||||||    
T  3936030 aaatattttagagggattgaaatcaaatattgttatatttagatgaaccatttacttatttaaccc 3935965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 24490762 - 24490694
Alignment:
Q  16 taagaaatattttagagggattaaaattaaatgttggtatatttagtgggaccatttacttatgtaaccc 85  Q
    ||||| ||||||||||| || |||||| ||||||||||||| ||||  ||||||||||||||| ||||||    
T  24490762 taagagatattttagagagactaaaatcaaatgttggtata-ttagaaggaccatttacttatttaaccc 24490694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 25906035 - 25905959
Alignment:
Q  8 caaaatcctaagaaatattttagagggattaaaattaaatgttggtatatttagtgggaccatttacttatgtaacc 84  Q
    ||||| |||| |||||| ||||| |||| |||||| |||||||||||||| ||  |||| ||||||||||| |||||    
T  25906035 caaaagcctatgaaatactttagggggactaaaatcaaatgttggtatatataaggggatcatttacttatttaacc 25905959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 37 - 84
Target Start/End: Complemental strand, 2858458 - 2858411
Alignment:
Q  37 taaaattaaatgttggtatatttagtgggaccatttacttatgtaacc 84  Q
    |||||| |||||||| ||||||||| |||||||||||||||| |||||    
T  2858458 taaaatcaaatgttgatatatttagggggaccatttacttatttaacc 2858411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 12272579 - 12272526
Alignment:
Q  8 caaaatcctaagaaatattttagagggattaaaattaaatgttggtatatttag 61  Q
    ||||| ||||| || |||||||||| || |||||| ||||||||||||||||||    
T  12272579 caaaaacctaaaaattattttagagagactaaaatcaaatgttggtatatttag 12272526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 13657613 - 13657556
Alignment:
Q  21 aatattttagagggattaaaattaaatgttggtatatttagtgggaccatttacttat 78  Q
    ||||||||||||| | |||||| ||||||| |||||||||  ||||||||||| ||||    
T  13657613 aatattttagaggaactaaaatcaaatgtttgtatatttaaagggaccatttatttat 13657556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 16939827 - 16939879
Alignment:
Q  17 aagaaatattttagagggattaaaattaaatgttggtatatttagtgggacca 69  Q
    |||||| |||||||||||| |||||| ||| |||||||||||||  |||||||    
T  16939827 aagaaaaattttagagggactaaaatgaaaagttggtatatttatagggacca 16939879  T

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Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 31125763 - 31125803
Alignment:
Q  17 aagaaatattttagagggattaaaattaaatgttggtatat 57  Q
    |||||||||||||||||||||||||  ||| ||||||||||    
T  31125763 aagaaatattttagagggattaaaacaaaaagttggtatat 31125803  T

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Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 37978650 - 37978694
Alignment:
Q  25 ttttagagggattaaaattaaatgttggtatatttagtgggacca 69  Q
    |||||||||||||||||  ||| ||||||||||||| ||||||||    
T  37978650 ttttagagggattaaaacgaaaagttggtatatttattgggacca 37978694  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 17430790 - 17430712
Alignment:
Q  8 caaaatcctaagaaatattttagagggattaaaattaaatgttggtatatttagtgggaccatttacttatgtaaccca 86  Q
    ||||| |||||| ||||||||||||||| |||||| |||||||||||||||||| ||||| ||||| |||  |||||||    
T  17430790 caaaagcctaaggaatattttagagggactaaaatcaaatgttggtatatttagagggacaatttatttacttaaccca 17430712  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 87
Target Start/End: Original strand, 32186646 - 32186724
Alignment:
Q  8 caaaatcctaagaaatattttagagggattaaaattaaatgttggtatatttagtgggaccatttacttatgtaacccaa 87  Q
    ||||| |||||  ||||||||||||| | ||||||||||||||||||||||||  |||||||||| ||||| ||||||||    
T  32186646 caaaagcctaaagaatattttagaggaactaaaattaaatgttggtatattta-agggaccattttcttatttaacccaa 32186724  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 17431139 - 17431208
Alignment:
Q  8 caaaatcctaagaaatattttagagggattaaaattaaatgttggtatatttagtgggaccatttactta 77  Q
    ||||| ||||| ||||||||||| |||| |||||| |||||||| |||||||||  ||||||||||||||    
T  17431139 caaaagcctaaaaaatattttagggggactaaaatcaaatgttgatatatttagatggaccatttactta 17431208  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 28687530 - 28687461
Alignment:
Q  16 taagaaatattttagagggattaaaattaaatgttggtatatttagtgggaccatttacttatgtaaccc 85  Q
    |||| |||||||||||| |||||||||||||||||||||||||||  |||  ||||||| ||| ||||||    
T  28687530 taaggaatattttagagagattaaaattaaatgttggtatatttaaagggctcatttacatatttaaccc 28687461  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 14 - 85
Target Start/End: Original strand, 54164651 - 54164722
Alignment:
Q  14 cctaagaaatattttagagggattaaaattaaatgttggtatatttagtgggaccatttacttatgtaaccc 85  Q
    ||||| |||||||||| || || |||||| |||||||||||||||||| | ||| |||||||||| ||||||    
T  54164651 cctaaaaaatattttatagagactaaaatcaaatgttggtatatttagggagactatttacttatttaaccc 54164722  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 75
Target Start/End: Complemental strand, 32185341 - 32185291
Alignment:
Q  25 ttttagagggattaaaattaaatgttggtatatttagtgggaccatttact 75  Q
    ||||||||||| |||||| |||||||||||||||||| ||||| |||||||    
T  32185341 ttttagagggactaaaatcaaatgttggtatatttagagggactatttact 32185291  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 34665156 - 34665234
Alignment:
Q  7 acaaaatcctaagaaatattttagagggattaaaattaaatgttggtatatttagtgggaccatttacttatgtaaccc 85  Q
    |||||| ||||| ||||||||||| | || |||||| ||||||||||||||||| |   ||||||||||||| ||||||    
T  34665156 acaaaagcctaaaaaatattttagggtgactaaaatcaaatgttggtatatttaatattaccatttacttatttaaccc 34665234  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 8 - 85
Target Start/End: Complemental strand, 7513604 - 7513527
Alignment:
Q  8 caaaatcctaagaaatattttagagggattaaaattaaatgttggtatatttagtgggaccatttacttatgtaaccc 85  Q
    ||||| ||||| ||||||||||  |  ||||||||||||||||||||||||||| ||  | |||||||||| ||||||    
T  7513604 caaaagcctaaaaaatattttaaggtaattaaaattaaatgttggtatatttagaggagctatttacttatttaaccc 7513527  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 2514355 - 2514310
Alignment:
Q  24 attttagagggattaaaattaaatgttggtatatttagtgggacca 69  Q
    ||||||||||||||||||| ||| |||||||||||||  |||||||    
T  2514355 attttagagggattaaaatgaaaagttggtatatttatagggacca 2514310  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 17250532 - 17250463
Alignment:
Q  15 ctaagaaatattttagagggattaaaattaaatgttggtatatttagtgggaccatttacttatgtaacc 84  Q
    |||||||||||||||  || | |||||| ||||||| |||||||| |  ||||||||||||||| |||||    
T  17250532 ctaagaaatattttaagggaaataaaatcaaatgtttgtatatttggaaggaccatttacttatttaacc 17250463  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 53343776 - 53343707
Alignment:
Q  14 cctaagaaatattttagagggattaaaattaaatgttggtatatttagtgggaccatttacttatgtaac 83  Q
    ||||||||||||||||  | || |||||| ||| |||||||||||||   ||||||||||||||| ||||    
T  53343776 cctaagaaatattttaacgagactaaaatcaaacgttggtatatttaagaggaccatttacttatttaac 53343707  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 60
Target Start/End: Original strand, 14598571 - 14598607
Alignment:
Q  24 attttagagggattaaaattaaatgttggtatattta 60  Q
    ||||||||||||||||||| ||| |||||||||||||    
T  14598571 attttagagggattaaaataaaaagttggtatattta 14598607  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 44917540 - 44917504
Alignment:
Q  24 attttagagggattaaaattaaatgttggtatattta 60  Q
    ||||||||||||||||||| ||| |||||||||||||    
T  44917540 attttagagggattaaaatgaaaagttggtatattta 44917504  T

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Target: scaffold0025 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 64017 - 64081
Alignment:
Q  21 aatattttagagggattaaaattaaatgttggtatatttagtgggaccatttacttatgtaaccc 85  Q
    |||||||||| || | ||||||||||||||||||||||||| | ||| ||||||| || ||||||    
T  64017 aatattttaggggaactaaaattaaatgttggtatatttagggagactatttactgatttaaccc 64081  T

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Target: scaffold0328 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 87
Target Start/End: Original strand, 11631 - 11710
Alignment:
Q  8 caaaatcctaagaaatattttagagggattaaaattaaatgttggtatatttagtgggaccatttacttatgtaacccaa 87  Q
    ||||| ||||||||||||||||||| || |||||| |||| || |||||||||  |  |||||||| |||| ||||||||    
T  11631 caaaaacctaagaaatattttagagtgactaaaatcaaatattcgtatatttaaagcaaccatttatttatttaacccaa 11710  T

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Target: scaffold0063 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 52092 - 52137
Alignment:
Q  24 attttagagggattaaaattaaatgttggtatatttagtgggacca 69  Q
    ||||||||||||||||||| ||| |||||||||||||  |||||||    
T  52092 attttagagggattaaaatgaaaagttggtatatttatagggacca 52137  T

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Target: scaffold0005 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 218807 - 218771
Alignment:
Q  24 attttagagggattaaaattaaatgttggtatattta 60  Q
    ||||||||||||||||||| ||| |||||||||||||    
T  218807 attttagagggattaaaataaaaagttggtatattta 218771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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