View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5584-Insertion-7 (Length: 372)
Name: NF5584-Insertion-7
Description: NF5584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5584-Insertion-7 |
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| [»] chr2 (8 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-174; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 8 - 372
Target Start/End: Original strand, 11605797 - 11606162
Alignment:
| Q |
8 |
aaaagggaaatggagagacaaaatagagtatcttgccaagcatgccgtgattcacgtttgaaacaacttaggcttgaaaatgaacttctgaaagaaaagg |
107 |
Q |
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| T |
11605797 |
aaaagggaaatggagagacaaaatagagtatcttgccaagcatgccgtgattcacgtttgaaacaacttcggcttgaaaatgaacttctgaaagaaaagg |
11605896 |
T |
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| Q |
108 |
tgagttagtataactacaaacaatgttttactgtttaattctaagataataatgnnnnnnnnattaagggctacaatatatcgactaatttaataactgt |
207 |
Q |
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| T |
11605897 |
tgagttagtataactacaaacaatgttttactgtttaattctaagataataatgttttttttattaagggctacaatatatcgactaatttaataactgt |
11605996 |
T |
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| Q |
208 |
atgtatgaatttatttattttttgtatgagaagctgtcaaagttgaatccaagctgcgtggaaaaaggggaactatcactggagttgaagttaggtcttc |
307 |
Q |
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| T |
11605997 |
atgtatgaatttatttattttttgtatgagaagctgtcaaagttgaatccaagctgcgtgggaaaaggggaactatcactggagttgaagttaggtcttc |
11606096 |
T |
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| Q |
308 |
cagaaagatcatcagatggaacctatctttagaattatgaagagttat-gtttgttcttgttgctg |
372 |
Q |
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| T |
11606097 |
cccaaagatcatcagatggaacctatctttagatttatgaggagttatggtttgttcttgttgctg |
11606162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 8 - 372
Target Start/End: Original strand, 11593881 - 11594246
Alignment:
| Q |
8 |
aaaagggaaatggagagacaaaatagagtatcttgccaagcatgccgtgattcacgtttgaaacaacttaggcttgaaaatgaacttctgaaagaaaagg |
107 |
Q |
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| T |
11593881 |
aaaagggaaatggagagacaaaatagagtatcttgccaagcatgccgtgattcacgtttgaaacaacttcggcttgaaaatgaacttctgaaagaaaagg |
11593980 |
T |
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| Q |
108 |
tgagttagtataactacaaacaatgttttactgtttaattctaagataataatgnnnnnnnnattaagggctacaatatatcgactaatttaataactgt |
207 |
Q |
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| T |
11593981 |
tgagttagtataactacaaacaatgttttactgtttaattctaagataataatgttttttttattaagggctacaatatatcgactaatttaataactgt |
11594080 |
T |
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| Q |
208 |
atgtatgaatttatttattttttgtatgagaagctgtcaaagttgaatccaagctgcgtggaaaaaggggaactatcactggagttgaagttaggtcttc |
307 |
Q |
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| T |
11594081 |
atgtatgaatttatttattttttgtatgagaagccgtcaaagttgaatccaagctgcgtgggaaaaggggaactatcactggagttgaagttaggtcttc |
11594180 |
T |
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| Q |
308 |
cagaaagatcatcagatggaacctatctttagaattatgaagagttat-gtttgttcttgttgctg |
372 |
Q |
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| T |
11594181 |
cccaaagatcatcagatggaacctatctttagatttatgaggagttatggtttgttcttgttgctg |
11594246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 17 - 339
Target Start/End: Original strand, 11613208 - 11613511
Alignment:
| Q |
17 |
atggagagacaaaatagagtatcttgccaagcatgccgtgattcacgtttgaaacaacttaggcttgaaaatgaacttctgaaagaaaaggtgagttagt |
116 |
Q |
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| T |
11613208 |
atggaaagacaaaagaatgtattttgccaagcatgccgtgattcacgtttgaaacaacttcggcttgaaaatgaacttctgaaagaaaaggtgagttagt |
11613307 |
T |
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| Q |
117 |
ataactacaaacaatgttttactgtttaattctaagataataatgnnnnnnnnattaagggctacaatatatcgactaatttaataactgtatgtatgaa |
216 |
Q |
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| T |
11613308 |
a------------atgtttcactatttaattctaagataataatgtttttat-attaagagctataatat--caactaatttaatatttgtatgtgtgaa |
11613392 |
T |
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| Q |
217 |
tttatttattttttgtatgagaagctgtcaaagttgaatccaagctgcgtggaaaaaggggaactatcactggagttgaagttaggtcttccagaaagat |
316 |
Q |
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||| ||||||||||||||||||||||||| ||| ||||||||| | ||| ||| | ||||||||||||||||||||||||||||||||| |||||| |
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| T |
11613393 |
ttt----attttttgtatgagaagctgtcaaaattggatccaagctacatgggaaatgaggaactatcactggagttgaagttaggtcttccccaaagat |
11613488 |
T |
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| Q |
317 |
catcagatggaacctatctttag |
339 |
Q |
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| T |
11613489 |
caacagatggaacctatctttag |
11613511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 8 - 139
Target Start/End: Complemental strand, 11724111 - 11723980
Alignment:
| Q |
8 |
aaaagggaaatggagagacaaaatagagtatcttgccaagcatgccgtgattcacgtttgaaacaacttaggcttgaaaatgaacttctgaaagaaaagg |
107 |
Q |
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| T |
11724111 |
aaaagggaaatggagagacaaaatagagtatcttgccaagcatgccgtgattcacgtttgaaacaacttcggtttgaaaatcaacttctgaaagaaaagg |
11724012 |
T |
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| Q |
108 |
tgagttagtataactacaaacaatgttttact |
139 |
Q |
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| T |
11724011 |
tgagttagtataactagacacaatgttttact |
11723980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 170 - 339
Target Start/End: Complemental strand, 11723378 - 11723215
Alignment:
| Q |
170 |
attaagggctacaatatatcgactaatttaataactgtatgtatgaatttatttattttttgtatgagaagctgtcaaagttgaatccaagctgcgtgga |
269 |
Q |
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| T |
11723378 |
attaagggctacaatat--cgactaatttaataattgtatgtatgaatttattt----tttgtatgagaaggtgtcaaaattggatccaaggtacatggg |
11723285 |
T |
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| Q |
270 |
aaaaggggaactatcactggagttgaagttaggtcttccagaaagatcatcagatggaacctatctttag |
339 |
Q |
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| T |
11723284 |
aaaagaggaactatcactggagttgaagtaaggtcttctccgaagatcatcagatggaacctatctttag |
11723215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 40 - 139
Target Start/End: Original strand, 11687810 - 11687909
Alignment:
| Q |
40 |
ttgccaagcatgccgtgattcacgtttgaaacaacttaggcttgaaaatgaacttctgaaagaaaaggtgagttagtataactacaaacaatgttttact |
139 |
Q |
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| T |
11687810 |
ttgccaagcatgccgtgattcacatttgaaataacttcggcttgaaaatgaacttctgaaagaaaaggtgagttagtataactacacacaatgttttact |
11687909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 220 - 339
Target Start/End: Original strand, 11688276 - 11688395
Alignment:
| Q |
220 |
atttattttttgtatgagaagctgtcaaagttgaatccaagctgcgtggaaaaaggggaactatcactggagttgaagttaggtcttccagaaagatcat |
319 |
Q |
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| T |
11688276 |
atttattaattgtatgagaaggtgtcaaaattggatccaaggcacatgggaaaagaggaactatcaccggagttgaagtaaggtcttccccgaagatcac |
11688375 |
T |
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| Q |
320 |
cagatggaacctatctttag |
339 |
Q |
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| T |
11688376 |
cagatggaacctatctttag |
11688395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 135
Target Start/End: Original strand, 11583936 - 11584008
Alignment:
| Q |
63 |
gtttgaaacaacttaggcttgaaaatgaacttctgaaagaaaaggtgagttagtataactacaaacaatgttt |
135 |
Q |
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| T |
11583936 |
gtttgaaacaacttcaggttgaaaatgctcgtctcaaagaaagggtgagttaggataactagatacaatgttt |
11584008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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