View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5584-Insertion-8 (Length: 240)
Name: NF5584-Insertion-8
Description: NF5584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5584-Insertion-8 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 7 - 240
Target Start/End: Original strand, 14774135 - 14774368
Alignment:
| Q |
7 |
atcaacttcatacaaatgtattactttttcaatcaaacacattatgattattcatataaatcatctcagtagaagactcattctggttcttcattctacc |
106 |
Q |
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| T |
14774135 |
atcaacttcatacaaatgtattactttttcaatcaaacacatgatgattattcatataaatcatctcagtagaagactcattctggttcttcattctacc |
14774234 |
T |
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| Q |
107 |
tttctcttccaacatcttaacatacataccataaacataagaacagaatccccacatgcacaaaacagttgaaacagccttaacaccaccaaatgcatct |
206 |
Q |
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| T |
14774235 |
tttctcttccaacatcttaacatacataccataaacataagaacagaatccccacatgcacaaaacagttgaaacagccttaacaccaccaaatgcatct |
14774334 |
T |
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| Q |
207 |
ctaaacaccaaaacacctcccaacacattcatag |
240 |
Q |
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| T |
14774335 |
ctaaacaccaaaacacctcccaacacattcatag |
14774368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 105 - 240
Target Start/End: Original strand, 14782110 - 14782245
Alignment:
| Q |
105 |
cctttctcttccaacatcttaacatacataccataaacataagaacagaatccccacatgcacaaaacagttgaaacagccttaacaccaccaaatgcat |
204 |
Q |
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| T |
14782110 |
cctttctcttccaacatcttaacatacataccataaacataagaacaaaatccccacatacacaaaacagttgaaacagctttcaaaccaccaaatgcat |
14782209 |
T |
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| Q |
205 |
ctctaaacaccaaaacacctcccaacacattcatag |
240 |
Q |
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| T |
14782210 |
ctctataaactataacaccacccaacacattcatag |
14782245 |
T |
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