View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5584_high_10 (Length: 436)
Name: NF5584_high_10
Description: NF5584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5584_high_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 372; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 19 - 426
Target Start/End: Original strand, 33374719 - 33375126
Alignment:
| Q |
19 |
ctttgtacactgatttccctatcttacacatttcactgaggttcattgtagctttcataattatgccaacttcatacactgttggcttacttacatagtt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||| || |||||||||||||||||||||||||||||||| || |
|
|
| T |
33374719 |
ctttgtacactgatttccctatcttacacatttcattaaggttcatggtagctttcataatcataccaacttcatacactgttggcttacttacataatt |
33374818 |
T |
|
| Q |
119 |
tgaaacttgggaaattaacttatctgttatctccacagaagggacacacttattctcacaagcctttctcttccttaaacaataaacataaaaaagtaat |
218 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33374819 |
tgaaacttcggaaattaacttatctgttatctccacagaaggcacacacttattctcacaagcctttctcttccttaaacaataaacataaaaaagtaat |
33374918 |
T |
|
| Q |
219 |
aataatagtgaaatcagaatagtgcatcctagacatataccaatggaaattataatagaaaaatgattgcttctctttctttcacttgaagaatagtatg |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
33374919 |
aataatagtgaaatcagaatagtgcatcctagacatataccaatggaaattataatagaaaaatgattgattctctttctttcacttgaagaatagtatg |
33375018 |
T |
|
| Q |
319 |
attgagaaagagctggtaagtttttcacaggaataaaaactggaaggttgattgcaacagtgaagttttgaccaaagttgtttgtatttgctgtgattat |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33375019 |
attgagaaagagctggtaagtttttcacaggaataaaaactggaaggttgattgcaacagtgaagttttgaccaaagttgtttgtatttgctgtgattat |
33375118 |
T |
|
| Q |
419 |
gtcctttg |
426 |
Q |
| |
|
|||||||| |
|
|
| T |
33375119 |
gtcctttg |
33375126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 162 - 409
Target Start/End: Original strand, 33389453 - 33389698
Alignment:
| Q |
162 |
acacacttattctcacaagcctttctcttccttaaacaataaacataaaaaagtaataataatagtgaaatcagaatagtgcatcctagacatataccaa |
261 |
Q |
| |
|
||||||| ||||||| |||||||||| ||||| |||||||| ||| ||| || |||| | |||||||||||||||||| || |||||||| ||| || |
|
|
| T |
33389453 |
acacactgattctcataagcctttcttttcctcaaacaatagacaaaaaccagaaatagtgatagtgaaatcagaatagcgcgtcctagactcgtactaa |
33389552 |
T |
|
| Q |
262 |
tggaaattataatagaaaaatgatt-gcttctctttctttcacttgaagaatagtatgattgagaaagagctggtaagtttttcacaggaataaaaactg |
360 |
Q |
| |
|
||||||| ||||| ||||||||| |||||||||||||||| |||| ||||| ||||| |||||||| ||||||||||||||| || |||||||||| |
|
|
| T |
33389553 |
tggaaatgataatgtgaaaatgatttgcttctctttctttcaattgatgaata---tgattaagaaagagatggtaagtttttcactgggataaaaactg |
33389649 |
T |
|
| Q |
361 |
gaaggttgattgcaacagtgaagttttgaccaaagttgtttgtatttgc |
409 |
Q |
| |
|
|| |||| ||||| || |||||||||||||||||| |||| |||||| |
|
|
| T |
33389650 |
aaaagttggttgcagcaatgaagttttgaccaaagtactttgcatttgc |
33389698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 315 - 421
Target Start/End: Original strand, 33382232 - 33382338
Alignment:
| Q |
315 |
tatgattgagaaagagctggtaagtttttcacaggaataaaaactggaaggttgattgcaacagtgaagttttgaccaaagttgtttgtatttgctgtga |
414 |
Q |
| |
|
||||||| |||||||| | ||||||||||||| || ||||||||||||| |||| ||||| |||||||||||||||||||||| ||| |||||| ||| |
|
|
| T |
33382232 |
tatgattaagaaagagatagtaagtttttcactgggataaaaactggaaagttggttgcagcagtgaagttttgaccaaagttctttccatttgcagtgg |
33382331 |
T |
|
| Q |
415 |
ttatgtc |
421 |
Q |
| |
|
||||||| |
|
|
| T |
33382332 |
ttatgtc |
33382338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University