View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5584_high_2 (Length: 752)

Name: NF5584_high_2
Description: NF5584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5584_high_2
NF5584_high_2
[»] chr5 (2 HSPs)
chr5 (69-492)||(39809454-39809877)
chr5 (491-734)||(39809902-39810148)
[»] chr3 (2 HSPs)
chr3 (173-284)||(15795914-15796025)
chr3 (362-412)||(15796103-15796153)
[»] chr8 (1 HSPs)
chr8 (533-575)||(5069727-5069769)
[»] chr1 (4 HSPs)
chr1 (532-571)||(10199410-10199449)
chr1 (532-575)||(32859944-32859987)
chr1 (523-569)||(15361060-15361106)
chr1 (523-571)||(7472331-7472380)
[»] chr6 (1 HSPs)
chr6 (521-575)||(32386561-32386615)
[»] chr4 (2 HSPs)
chr4 (532-570)||(24929522-24929560)
chr4 (523-564)||(47970316-47970357)
[»] chr2 (3 HSPs)
chr2 (533-571)||(12147487-12147525)
chr2 (532-569)||(33087626-33087663)
chr2 (523-568)||(35379021-35379066)


Alignment Details
Target: chr5 (Bit Score: 420; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 69 - 492
Target Start/End: Original strand, 39809454 - 39809877
Alignment:
Q  69 accaaagtttgaactcttaattagtcttctacattttttgagtgtttcagctcaaacacttgatttgtttggtgaaactagtagagtactaatgaggcat 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39809454 accaaagtttgaactcttaattagtcttctacattttttgagtgtttcagctcaaacacttgatttgtttggtgaaactagtagagtactaatgaggcat 39809553  T
Q  169 actttgtaggtggaaggagaggaacttcaaaggttagcatacagaagatgggaaagagagcaaggacgaagggatgcaacagaggatttgtctgaagagt 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39809554 actttgtaggtggaaggagaggaacttcaaaggttagcatacagaagatgggaaagagagcaaggacgaagggatgcaacagaggatttgtctgaagagt 39809653  T
Q  269 tgtcagaaggagaaaagggagatggcattggggagataatacaaattgagactcaacagaaaaaacttcagaggcatgcttctagcctggaaatatggtc 368  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39809654 tgtcagagggagaaaagggagatggcattggggagataatacaaattgagactcaacagaaaaaacttcagaggcatgcttctagcctggaaatatggtc 39809753  T
Q  369 tgatgacaaaaaggaaaagaaactttatattatcctcttaaggtatactttattcttagactcggataaacaatttaattaaatgcttaaagttatatca 468  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39809754 tgatgacaaaaaggaaaagaaactttatattatcctcttaaggtatactttattcttagactcggataaacaatttaattaaatgcttaaagttatatca 39809853  T
Q  469 taagtgtttattgtacaagccctt 492  Q
    ||||||||||||||||||||||||    
T  39809854 taagtgtttattgtacaagccctt 39809877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 491 - 734
Target Start/End: Original strand, 39809902 - 39810148
Alignment:
Q  491 tttcctataagttataagctatttgtgattgttatcatggcgagcttatgaaaataagctgaaaacgatttatgaacatgttataggtctgctttcataa 590  Q
    |||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39809902 tttcgtataagttatatgctatttgcgattgttatcatggcgagcttatgaaaataagctgaaaacgatttatgaacatgttataggtctgctttcataa 39810001  T
Q  591 actccttcaaagagtttcgcgagtgtttatgttagtagataagctagctagctcaaataagttaatctaaacatacc---ttattattaattgatatctt 687  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||   ||||||||||||||||||||    
T  39810002 actccttcaaagagtttcgcgagtgtttatgttagtagataagctagctagctcaaataagttaatctattcataccttattattattaattgatatctt 39810101  T
Q  688 tcctaatattactattgtgaaagctatgatcatatgtatgtaaatgc 734  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  39810102 tcctaatattactattgtgaaagctatgatcatatgtatgtaaatgc 39810148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 173 - 284
Target Start/End: Original strand, 15795914 - 15796025
Alignment:
Q  173 tgtaggtggaaggagaggaacttcaaaggttagcatacagaagatgggaaagagagcaaggacgaagggatgcaacagaggatttgtctgaagagttgtc 272  Q
    ||||| ||||| | |||||| | || || |||||| ||||||||||||| ||||| |||||||| || ||||| ||||| ||  |||| ||||| |||||    
T  15795914 tgtagttggaatgggaggaagtacagagattagcaaacagaagatgggagagagaacaaggacgcagagatgctacagaagacatgtcagaagacttgtc 15796013  T
Q  273 agaaggagaaaa 284  Q
    ||||||||||||    
T  15796014 agaaggagaaaa 15796025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 362 - 412
Target Start/End: Original strand, 15796103 - 15796153
Alignment:
Q  362 tatggtctgatgacaaaaaggaaaagaaactttatattatcctcttaaggt 412  Q
    ||||||||||||| ||||| |||||||| ||||||||| ||||| ||||||    
T  15796103 tatggtctgatgataaaaatgaaaagaagctttatattgtcctcataaggt 15796153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 533 - 575
Target Start/End: Original strand, 5069727 - 5069769
Alignment:
Q  533 agcttatgaaaataagctgaaaacgatttatgaacatgttata 575  Q
    ||||||||||||||||||||||| || ||||||||||||||||    
T  5069727 agcttatgaaaataagctgaaaatgacttatgaacatgttata 5069769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 532 - 571
Target Start/End: Complemental strand, 10199449 - 10199410
Alignment:
Q  532 gagcttatgaaaataagctgaaaacgatttatgaacatgt 571  Q
    ||||||||||||||||||||||||| | ||||||||||||    
T  10199449 gagcttatgaaaataagctgaaaacaacttatgaacatgt 10199410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 532 - 575
Target Start/End: Complemental strand, 32859987 - 32859944
Alignment:
Q  532 gagcttatgaaaataagctgaaaacgatttatgaacatgttata 575  Q
    ||||||||| ||| ||||||||||| ||||||||||||||||||    
T  32859987 gagcttatggaaacaagctgaaaacaatttatgaacatgttata 32859944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 523 - 569
Target Start/End: Original strand, 15361060 - 15361106
Alignment:
Q  523 tatcatggcgagcttatgaaaataagctgaaaacgatttatgaacat 569  Q
    |||| ||| ||||||||||||||||||||||||| | ||||||||||    
T  15361060 tatcctggagagcttatgaaaataagctgaaaacaacttatgaacat 15361106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 523 - 571
Target Start/End: Original strand, 7472331 - 7472380
Alignment:
Q  523 tatcatggcgagcttatgaaaataagctgaaaac-gatttatgaacatgt 571  Q
    |||| ||| ||||||||||||||||||||||||| | |||||||||||||    
T  7472331 tatcttggagagcttatgaaaataagctgaaaacagttttatgaacatgt 7472380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 521 - 575
Target Start/End: Complemental strand, 32386615 - 32386561
Alignment:
Q  521 gttatcatggcgagcttatgaaaataagctgaaaacgatttatgaacatgttata 575  Q
    |||||| ||| ||||||||||||||||||||||||| | || || ||||||||||    
T  32386615 gttatcctggagagcttatgaaaataagctgaaaacaagttgtggacatgttata 32386561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 532 - 570
Target Start/End: Original strand, 24929522 - 24929560
Alignment:
Q  532 gagcttatgaaaataagctgaaaacgatttatgaacatg 570  Q
    ||||||||| ||||||||||||||| |||||||||||||    
T  24929522 gagcttatggaaataagctgaaaacaatttatgaacatg 24929560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 523 - 564
Target Start/End: Original strand, 47970316 - 47970357
Alignment:
Q  523 tatcatggcgagcttatgaaaataagctgaaaacgatttatg 564  Q
    |||||||| ||||||||| ||||||||||||||| |||||||    
T  47970316 tatcatggagagcttatgcaaataagctgaaaacaatttatg 47970357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 533 - 571
Target Start/End: Original strand, 12147487 - 12147525
Alignment:
Q  533 agcttatgaaaataagctgaaaacgatttatgaacatgt 571  Q
    ||||||||||||||| |||||||| ||||||||||||||    
T  12147487 agcttatgaaaataaactgaaaacaatttatgaacatgt 12147525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 532 - 569
Target Start/End: Complemental strand, 33087663 - 33087626
Alignment:
Q  532 gagcttatgaaaataagctgaaaacgatttatgaacat 569  Q
    ||||||||| |||||||||||||||| |||||||||||    
T  33087663 gagcttatgtaaataagctgaaaacggtttatgaacat 33087626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 523 - 568
Target Start/End: Complemental strand, 35379066 - 35379021
Alignment:
Q  523 tatcatggcgagcttatgaaaataagctgaaaacgatttatgaaca 568  Q
    |||| ||| ||||||||||||||||||||||||| | |||||||||    
T  35379066 tatcttggagagcttatgaaaataagctgaaaacaacttatgaaca 35379021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University