View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5584_high_21 (Length: 295)
Name: NF5584_high_21
Description: NF5584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5584_high_21 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 13 - 278
Target Start/End: Original strand, 15794577 - 15794842
Alignment:
| Q |
13 |
tgaaatgggctaaaagtctttggaatttctaatgaaccttctaacatttttacaacatcactcatcataggccttaattcttgcctatattgaacacacc |
112 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
15794577 |
tgaaatgggttaaaagtctttggaatttctaatgaaccttccaacattttcacaacatcactcatcataggccttaattgttgcctatattgaacacacc |
15794676 |
T |
|
| Q |
113 |
ataaagctaccttaaccattctctcagcaatctcaatatttttctcttctattccacaaactatcattgcctcctccaatagtccagcatcaaatttttt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15794677 |
ataaagctaccttaaccattctctcagcaatctctctatttttctcttctattccacaaactatcattgcctcctccaatagtccagcatcaaatttttt |
15794776 |
T |
|
| Q |
213 |
ccaaacccaaattggaaaccactcttggctttctgtatttttaatgtcaaggtttcttctcctacc |
278 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15794777 |
ccaaacccaaattggaaaccactcttggctttctgtatttttaatgtcaaggtttcttctcctacc |
15794842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 13 - 279
Target Start/End: Complemental strand, 15773391 - 15773125
Alignment:
| Q |
13 |
tgaaatgggctaaaagtctttggaatttctaatgaaccttctaacatttttacaacatcactcatcataggccttaattcttgcctatattgaacacacc |
112 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||| || ||| ||||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
15773391 |
tgaaatgggttaaaagtctttggaatttctaatgaaccttctaacattttcaccacaacactcattataggccttaattctggcctatattgaacacacc |
15773292 |
T |
|
| Q |
113 |
ataaagctaccttaaccattctctcagcaatctcaatatttttctcttctattccacaaactatcattgcctcctccaatagtccagcatcaaatttttt |
212 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||| |
|
|
| T |
15773291 |
ataaagctaccttaatcattctctcagcaatctctttatttttctcttctattccacaaactatcattgcctcccccaaaagtccagcatcttttttttt |
15773192 |
T |
|
| Q |
213 |
ccaaacccaaattggaaaccactcttggctttctgtatttttaatgtcaaggtttcttctcctacct |
279 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||| |
|
|
| T |
15773191 |
ccaaacccaaattggaaaccactcttggctttcagtgtttttaatggcaaggtttcttctcctacct |
15773125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 25 - 247
Target Start/End: Complemental strand, 15768748 - 15768526
Alignment:
| Q |
25 |
aaagtctttggaatttctaatgaaccttctaacatttttacaacatcactcatcataggccttaattcttgcctatattgaacacaccataaagctacct |
124 |
Q |
| |
|
|||| ||||| |||||| | | ||||||| ||||||| ||| ||| ||||||| |||| ||| ||||| |||||||||||||||| |||||||||| |
|
|
| T |
15768748 |
aaaggctttgaaatttcaactaaaccttccaacatttgtaccacaacactcattttaggtcttgattctggcctatattgaacacatgccaaagctacct |
15768649 |
T |
|
| Q |
125 |
taaccattctctcagcaatctcaatatttttctcttctattccacaaactatcattgcctcctccaatagtccagcatcaaattttttccaaacccaaat |
224 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||| ||||| |||||| || | || | || | || ||||||| ||||||||||||||||| || |
|
|
| T |
15768648 |
taaccattctctctacaatctccatatttttctcctctatcccacaagctgctaccaattcattcacttgttcagcatcgaattttttccaaacccatat |
15768549 |
T |
|
| Q |
225 |
tggaaaccactcttggctttctg |
247 |
Q |
| |
|
|||||||| ||||||||||||| |
|
|
| T |
15768548 |
cggaaaccattcttggctttctg |
15768526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 172
Target Start/End: Complemental strand, 15789322 - 15789249
Alignment:
| Q |
99 |
atattgaacacaccataaagctaccttaaccattctctcagcaatctcaatatttttctcttctattccacaaa |
172 |
Q |
| |
|
|||||||||||||||| ||| ||||| | |||||||||||| ||||| ||| ||||||||| |||||||||| |
|
|
| T |
15789322 |
atattgaacacaccattgagcaacctttaacattctctcagctttctcagtatctttctcttcaattccacaaa |
15789249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 172
Target Start/End: Complemental strand, 15793520 - 15793447
Alignment:
| Q |
99 |
atattgaacacaccataaagctaccttaaccattctctcagcaatctcaatatttttctcttctattccacaaa |
172 |
Q |
| |
|
||||||||||||||||| ||| ||||| | ||||||||| || |||||| ||| ||||||||| ||| |||||| |
|
|
| T |
15793520 |
atattgaacacaccatagagcaacctttaacattctctctgctatctcactatctttctcttcaatttcacaaa |
15793447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 172
Target Start/End: Original strand, 15778604 - 15778673
Alignment:
| Q |
103 |
tgaacacaccataaagctaccttaaccattctctcagcaatctcaatatttttctcttctattccacaaa |
172 |
Q |
| |
|
||||||||||||| ||| ||||| | ||||||||| || |||||| ||| ||||||||| | |||||||| |
|
|
| T |
15778604 |
tgaacacaccatagagcaaccttcaacattctctctgctatctcattatctttctcttcaactccacaaa |
15778673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University