View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5584_high_22 (Length: 289)
Name: NF5584_high_22
Description: NF5584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5584_high_22 |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 15 - 274
Target Start/End: Complemental strand, 45204809 - 45204555
Alignment:
| Q |
15 |
aacaaacaaataaggagagagggtcacgtacgttggcaaatacctctagaaaagtttaatatcgaagtctaatttcctttcaaattaatattcatagtaa |
114 |
Q |
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| T |
45204809 |
aacaaacaaataaggagagagggtcacgtacgttggcaaatatctctagaaaagtttaatatcgaagtctaatttcctttcaaattaatattcatagtaa |
45204710 |
T |
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| Q |
115 |
gccagaaagaagcaatgagaaaattaaagaaatcggattattcaacaagccaaagtaattacaatgtatcattgatcaaatggttttgatgattgggtgt |
214 |
Q |
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| T |
45204709 |
gccagaaagaagcaatgag-aaattaaagaaatcggattattcaacaagccaaagtaattacaatgtatcattgatcaaatggttttgatgattgggtgt |
45204611 |
T |
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| Q |
215 |
gagcatatagatagacgcgggatcaaactttgtgttttttcgcgttcaactgttatttct |
274 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45204610 |
gagcat----atagacgcgggatcaaactttgtgttttttcgcgttcaactgttatttct |
45204555 |
T |
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