View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5584_high_23 (Length: 271)
Name: NF5584_high_23
Description: NF5584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5584_high_23 |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 7e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 13 - 255
Target Start/End: Original strand, 43090531 - 43090769
Alignment:
| Q |
13 |
aatatactttctaacataaaattttcaatacactcccttctattagttaaatttcaaatgggtaaatccaatccaaattacgtaagtctcnnnnnnnttc |
112 |
Q |
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| T |
43090531 |
aatatactttctaacataaaattttcaatacactcccttttattagttaaatttcaaatgggtaaatccaa-----attacgtaagtctccaaaaatttc |
43090625 |
T |
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| Q |
113 |
acgaga-cttgtgcaaatttcaacaaactaaaagaagtgtgtcgagaagcaaatgttaaagagtgtgttgctacaatttcgcgacatagttgtaagatgt |
211 |
Q |
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| T |
43090626 |
aagagaacttgtgcaaatttcaacaaactaaaagaagtgtgttgagaagcgaatgttaaagagtgtgttgctacaatttcgcgacataattgtaagatgt |
43090725 |
T |
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| Q |
212 |
agttttgtcatttatatacatatgaaatatgatgtgtaaaatat |
255 |
Q |
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| T |
43090726 |
agttttgtcatttatatacatatgaaatatgatgtttaaaatat |
43090769 |
T |
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