View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5584_high_27 (Length: 263)
Name: NF5584_high_27
Description: NF5584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5584_high_27 |
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| [»] scaffold1337 (1 HSPs) |
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| [»] scaffold0067 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 11 - 216
Target Start/End: Original strand, 30578369 - 30578575
Alignment:
| Q |
11 |
cagagattcattctctcgtcccttccgcaagaagggaacaatagccttagccacctacctcaggacctatcatatcggcgactatgtcgatattagagtt |
110 |
Q |
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| T |
30578369 |
cagagattcattctctcgtcccttccgcaagaagggaacaatagccttagccacctacctcaggacctatcatatcggcgactatgtcgatattagagtt |
30578468 |
T |
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| Q |
111 |
aacggagctgtgcacaaaggtatgccgcacaaattctacca-ggtcgtaccagtcgtgtctgcaatgtgactaagcgggtcattggtgttgaagtcaata |
209 |
Q |
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| T |
30578469 |
aacggagctgtgcacaaaggtatgccgcacaaattctaccacggtcgtaccggtcgtgtctggaatgtgactaagcgtgccattggtgttgaagtcaata |
30578568 |
T |
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| Q |
210 |
agcaagt |
216 |
Q |
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||||||| |
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| T |
30578569 |
agcaagt |
30578575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 215 - 263
Target Start/End: Original strand, 30579508 - 30579556
Alignment:
| Q |
215 |
gttaggaacaagatattgaggaagaggattcatgtccgagtggagcatg |
263 |
Q |
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| T |
30579508 |
gttaggaacaagatattgaggaagaggatccatgtccgagtggagcatg |
30579556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 21257183 - 21257252
Alignment:
| Q |
15 |
gattcattctctcgtcccttccgcaagaagggaacaatagccttagccacctacctcaggacctatcatat |
85 |
Q |
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| T |
21257183 |
gattcgttctcttgtccattccccaagaaaggaacaatagccctagctacatacctcagga-ctatcatat |
21257252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 12 - 159
Target Start/End: Original strand, 43828404 - 43828552
Alignment:
| Q |
12 |
agagattcattctctcgtcccttccgcaagaagggaacaatagccttagccacctacctcaggacctatcatatcggcgactatgtcgatattagagtta |
111 |
Q |
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| T |
43828404 |
agagactctttctctcgtccattcaggaagaagggtacaatcgcccttgccacttacctcagaacctatcacatcggcgattatgttgatgtcagggtta |
43828503 |
T |
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| Q |
112 |
acggagctgtgcacaaaggtatgccgcacaaattctacca-ggtcgtac |
159 |
Q |
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| T |
43828504 |
acggtgctgtacacaagggtatgcctcataagttctaccacggtcgtac |
43828552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1337 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold1337
Description:
Target: scaffold1337; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 66 - 115
Target Start/End: Original strand, 639 - 688
Alignment:
| Q |
66 |
tacctcaggacctatcatatcggcgactatgtcgatattagagttaacgg |
115 |
Q |
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| T |
639 |
tacctcagaacttatcatatcggtgactatgtcgatattaggattaacgg |
688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0067 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0067
Description:
Target: scaffold0067; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 66 - 115
Target Start/End: Complemental strand, 18359 - 18310
Alignment:
| Q |
66 |
tacctcaggacctatcatatcggcgactatgtcgatattagagttaacgg |
115 |
Q |
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| T |
18359 |
tacctcagaacttatcatatcggtgactatgtcgatattaggattaacgg |
18310 |
T |
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