View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5584_high_28 (Length: 263)
Name: NF5584_high_28
Description: NF5584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5584_high_28 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 20 - 252
Target Start/End: Original strand, 4190539 - 4190770
Alignment:
| Q |
20 |
gttacttagaacaattagaattgaatcctttggaaatttaactaattgatgccgatcgttgaaaatttgttgcttgattggccatattcgaaaatccaac |
119 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4190539 |
gttacttagaacaattggaattgaatcctttggaaatttaactaattgatgcc-atcgttgaaaatttgttgcttgattggccatattcgaaaatccaac |
4190637 |
T |
|
| Q |
120 |
atagtccaactgttgaaataattgctacaaaaacaaagatatattttatgatgaaatatgttcatgggttgaaacttgaatcaaagattacatgcgaata |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4190638 |
atagtccaactgttgaaataattgctacaaaagcaaagatctattttatgatgaaatatgttcatgggttgaaacttgaatcaaagattacatgcgaata |
4190737 |
T |
|
| Q |
220 |
tgtagtataattagaaggactctagtaagaata |
252 |
Q |
| |
|
||| |||||||||||||||||||||||||||| |
|
|
| T |
4190738 |
tgttatataattagaaggactctagtaagaata |
4190770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University