View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5584_high_30 (Length: 255)
Name: NF5584_high_30
Description: NF5584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5584_high_30 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 10 - 255
Target Start/End: Original strand, 35954430 - 35954679
Alignment:
| Q |
10 |
attatactcgggttggtaatttgtcttgggataatctccaaccaaaca--actannnnnnngtgctattgaagtgttccacaaccactcaagaactccca |
107 |
Q |
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| T |
35954430 |
attatactcgggttggtaatttgtcttgggataatctccaaccaaacacaactatttttttgtgctattgaagtgttccacaaccactcaagaactccca |
35954529 |
T |
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| Q |
108 |
acattaaaatcatcacgaatctgcatatttttcaacgtctgataggattcttttatagtaaaaatgatgtttccatcattcatttaaatgtatacgccac |
207 |
Q |
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| T |
35954530 |
acattaaaatcatcacgaatctgcatatttttcaacgtctgataggatcctttaatagtaaaaatgatgtttccatcattcatttaaatgtatacgccac |
35954629 |
T |
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| Q |
208 |
tcgatattgtgactgcactctagaaaa--tttgtgtcaattcttcagcaa |
255 |
Q |
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| T |
35954630 |
tcgatattgtgactgcactctagaaaatttttgtgtcaattcttcagcaa |
35954679 |
T |
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