View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5584_high_31 (Length: 254)
Name: NF5584_high_31
Description: NF5584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5584_high_31 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 25 - 254
Target Start/End: Original strand, 44636544 - 44636783
Alignment:
| Q |
25 |
atacttataatttacaatttgttggtagatgtagatccatcatccgtagactggactaacatatagactcgaatacatgaagccataatttttcaatcgc |
124 |
Q |
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| T |
44636544 |
atacttataatttacaatttgttggtagatgtagatccgtcatccgtagactggactaacatatagactcgaatacctgaagccataa---ttcaatcgc |
44636640 |
T |
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| Q |
125 |
ggagggtcccccaat-------------ccgttacaggtttactatatcctatgtgtannnnnnnngaaggaagaagttttactatgagtgtattttaat |
211 |
Q |
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| T |
44636641 |
ggagggtcccccaatcaacatacttccgccgttacaggtttactatatcctatgtgta-tttttttgaaggaagaagttttactatgagtgtattttaat |
44636739 |
T |
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| Q |
212 |
catatata-ttttttgttaaccatttggaaataatttgaatttt |
254 |
Q |
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| T |
44636740 |
catatatatttttttgttaaccatttgaaaataatttgaatttt |
44636783 |
T |
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