View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5584_high_32 (Length: 253)
Name: NF5584_high_32
Description: NF5584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5584_high_32 |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 3679416 - 3679174
Alignment:
| Q |
1 |
aattgaccatagctgtcatattttcatttctagtactgctatttatcaagaacatgcctcatcacgatcttcccgaatcgatacaccgtacacgttgtaa |
100 |
Q |
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| T |
3679416 |
aattgaccataactgtcatattttcatttctagtactgctatttatcaagaacatgcctcatcacgatcttcccgaatcgatacaccgtacacgttgtaa |
3679317 |
T |
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| Q |
101 |
ttattaagaagaagtagtgtatagttcaggaatgagcggaaatcacagcgtgtatgtgttataagaaaccaatcacttgctgccaaatcaattcgtgatg |
200 |
Q |
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| T |
3679316 |
ttattaagaagaagtagtgtatagttcaggaatgagcggaaatcacagcgtgtatgtgttataagaaaccaatcacttgctgccaaatcaattcgtgatg |
3679217 |
T |
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| Q |
201 |
cgtttttgatgaatactcttcgtacaaatatcattatcctttg |
243 |
Q |
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| T |
3679216 |
cgttttttatgaatactcttcgtacaaatatcattatcctttg |
3679174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 15 - 242
Target Start/End: Complemental strand, 3693925 - 3693705
Alignment:
| Q |
15 |
gtcatattttcatttctagtactgctatttatcaagaacatgcctcatcacgatcttcccgaatcgatacaccgtacacgttgtaattattaag-aagaa |
113 |
Q |
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| T |
3693925 |
gtcatatttt-atttctagtactgttgtttatcaaaaacacacctcatcatgatcttcccgaatcgatac---gt----gttgtaattataaaggaagaa |
3693834 |
T |
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| Q |
114 |
gtagtgtatagttcaggaatgagcggaaatcacagcgtgtatgtgttataagaaaccaatcacttgctgccaaatcaattcgtgatgcgtttttgatgaa |
213 |
Q |
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| T |
3693833 |
gcagtgtatggttcaggaatgagcggaaatcacagtgtgtatgtgttataagaaaccaatcacttactgccaaatcagttcgtgatgcgttattgatcaa |
3693734 |
T |
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| Q |
214 |
tactcttcgtacaaatatcattatccttt |
242 |
Q |
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| T |
3693733 |
tattcttcgtagaaatatcattatccttt |
3693705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 8 - 242
Target Start/End: Complemental strand, 3686165 - 3685938
Alignment:
| Q |
8 |
catagctgtcatattttcatttctagtactgctatttatcaagaacatgcctcatcacgatcttcccgaatcgatacaccgtacacgttgtaattattaa |
107 |
Q |
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|||| |||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| || || |||||||| || |
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| T |
3686165 |
cataactgtcatattttt-tttctagtactgctatttatcaagaacacacctcataacgatcttcccgaatcgatac---gt----gtggtaattataaa |
3686074 |
T |
|
| Q |
108 |
g-aagaagtagtgtatagttcaggaatgagcggaaatcacagcgtgtatgtgttataagaaaccaatcacttgctgccaaatcaattcgtgatgcgtttt |
206 |
Q |
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| T |
3686073 |
ggaagaagttgtgtatagttcatgaatgagcggaaatcacagtgtgtatgtgttaaaag-aaccaatcacttactgccacatcagttcgcgatgcgttcg |
3685975 |
T |
|
| Q |
207 |
tgatgaatactcttcg-tacaaatatcattatccttt |
242 |
Q |
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|||| ||| |||||| | |||||||||||||||||| |
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| T |
3685974 |
tgatctatattcttcgatgcaaatatcattatccttt |
3685938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 26 - 164
Target Start/End: Complemental strand, 3675711 - 3675579
Alignment:
| Q |
26 |
atttctagtactgctatttatcaagaacatgcctcatcacgatcttcccgaatcgatacaccgtacacgttgtaattattaag-aagaagtagtgtatag |
124 |
Q |
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|||||||||||| |||||||||||||||| |||| || ||||||||||||||||| | || ||||||||||| ||| |||||| ||||||||| |
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| T |
3675711 |
atttctagtactactatttatcaagaacacatctcaccatgatcttcccgaatcgattc---gt----gttgtaattataaaggaagaagcagtgtatag |
3675619 |
T |
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| Q |
125 |
ttcaggaatgagcggaaatcacagcgtgtatgtgttataa |
164 |
Q |
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| T |
3675618 |
ttctggaatgagcggaaatgacagcacgtaagtgttataa |
3675579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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