View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5584_high_35 (Length: 249)
Name: NF5584_high_35
Description: NF5584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5584_high_35 |
 | |
|
| [»] scaffold0577 (1 HSPs) |
| | |
|
| [»] scaffold0004 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 35209837 - 35209593
Alignment:
| Q |
1 |
ctaccttttcattatttgtgttgaaggtttatccttccttgttcacgaagttgatcgtcgaaatgatattagatgtatcatgatttgcacgggtgcaccc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||| |
|
|
| T |
35209837 |
ctaccttttcattatttgtgttgaaggtttatccttccttgttcacgaagttgatcatcgaaatgatattagaggtatcatgatttgcacgggtgcgccc |
35209738 |
T |
|
| Q |
101 |
gttacttctcacatt--ctcttcacagacgattgttttctattttttggagcatgtgaaggtgaggcggttgttatggaatatatattggttgtttatga |
198 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35209737 |
gttacttctcacatatcctcttcacagacgattgttttctattttttggagcatgtgaaggtgaggcggttgttatggaatatatattggttgtttatga |
35209638 |
T |
|
| Q |
199 |
agaagcttcgaggcaagctattaacttatagaaagtagaattatt |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35209637 |
agaagcttcgaggcaagctattaacttatagaaagtagaattatt |
35209593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 2 - 222
Target Start/End: Original strand, 29508362 - 29508584
Alignment:
| Q |
2 |
taccttttcattatttgtgttgaaggtttatccttccttgttcacgaagttgatcgtcgaaatgatattagatgtatcatgatttgcacgggtgcacccg |
101 |
Q |
| |
|
|||||||| |||||||| |||||||||||||| | |||| ||| |||| || ||| ||||||||||||| || |||||||||||||| ||| || |
|
|
| T |
29508362 |
tacctttttattatttgcgttgaaggtttatcatcccttattcgtgaagctgggcgtataaatgatattagaggtgccatgatttgcacggatgcgccaa |
29508461 |
T |
|
| Q |
102 |
ttacttctcacattctcttcacagacgattgttttctattttttggagcatgtgaaggtgaggcggttgttatg--gaatatatattggttgtttatgaa |
199 |
Q |
| |
|
||| ||||||| | ||||| ||||||||||||||||||||||| |||| |||||| | ||||| ||||||||| || |||||||||||||||||||| |
|
|
| T |
29508462 |
ttatttctcacctcctctttgcagacgattgttttctattttttagagcttgtgaatgagaggcagttgttatgaaaaaaatatattggttgtttatgaa |
29508561 |
T |
|
| Q |
200 |
gaagcttcgaggcaagctattaa |
222 |
Q |
| |
|
||||||||| |||| ||||||| |
|
|
| T |
29508562 |
gaagcttcggagcaaactattaa |
29508584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 222
Target Start/End: Original strand, 2542650 - 2542855
Alignment:
| Q |
17 |
tgtgttgaaggtttatccttccttgttcacgaagttgatcgtcgaaatgatattagatgtatcatgatttgcacgggtgcacccgttacttctcacattc |
116 |
Q |
| |
|
||||||||||| | |||| |||| ||| |||| ||| | ||| |||||||||||| ||| ||||| || || |||||| ||| ||||||| ||| |
|
|
| T |
2542650 |
tgtgttgaaggcctttcctcccttattcgtgaagctgaacatcgtaatgatattagaggtaatatgatatggacaaatgcaccaattatttctcaccttc |
2542749 |
T |
|
| Q |
117 |
tcttcacagacgattgttttctattttttggagcatgtgaaggtgaggcggttgttatggaatatatattggttgtttatgaagaagcttcgaggcaagc |
216 |
Q |
| |
|
|||| |||||||||||||||| || |||||||| |||||| ||||||| ||| |||| || |||| |||| | |||||||| | ||| |||||||| |
|
|
| T |
2542750 |
tctttgcagacgattgttttcttttctttggagcttgtgaacgtgaggctgtttgtatgaaaaatattttggctacctatgaagaggtttctaggcaagc |
2542849 |
T |
|
| Q |
217 |
tattaa |
222 |
Q |
| |
|
||||| |
|
|
| T |
2542850 |
cattaa |
2542855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 222
Target Start/End: Original strand, 48444645 - 48444859
Alignment:
| Q |
8 |
ttcattatttgtgttgaaggtttatccttccttgttcacgaagttgatcgtcgaaatgatattagatgtatcatgatttgcacgggtgcacccgttactt |
107 |
Q |
| |
|
||||| ||||||||||||||| | |||| |||| ||| |||| ||| ||| | ||||| |||||| ||| ||||| ||||| | || ||| |||| || |
|
|
| T |
48444645 |
ttcatcatttgtgttgaaggtctttcctcccttattcgtgaagctgaacgttgtaatgacattagaggtactatgatatgcacagatgtaccagttattt |
48444744 |
T |
|
| Q |
108 |
ctcacattctcttcacagacgattgttttctattttttggagcatgtgaaggtgaggcggttgttatggaatatatattggttgtttatgaagaagcttc |
207 |
Q |
| |
|
|||| ||||||| |||||| ||| ||||| || ||| |||| ||||| ||||||| ||| |||| | |||| |||| | ||||||||||||||| |
|
|
| T |
48444745 |
ctcatcttctctttgcagacggttgctttcttttctttagagcttgtgatcgtgaggctgtttgtatgaagaatattttggctacttatgaagaagcttc |
48444844 |
T |
|
| Q |
208 |
gaggcaagctattaa |
222 |
Q |
| |
|
| |||| || ||||| |
|
|
| T |
48444845 |
ggggcaggccattaa |
48444859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0577 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0577
Description:
Target: scaffold0577; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 6 - 222
Target Start/End: Complemental strand, 4363 - 4147
Alignment:
| Q |
6 |
ttttcattatttgtgttgaaggtttatccttccttgttcacgaagttgatcgtcgaaatgatattagatgtatcatgatttgcacgggtgcacccgttac |
105 |
Q |
| |
|
||||||| ||||||||||||||| | |||| || ||| |||| ||| ||||| |||||||||||| ||| ||||| ||||| | |||||| ||| |
|
|
| T |
4363 |
ttttcatcatttgtgttgaaggtctttcctctctgattcgtgaagctgaacgtcgcaatgatattagaggtactatgatatgcacagatgcaccaattat |
4264 |
T |
|
| Q |
106 |
ttctcacattctcttcacagacgattgttttctattttttggagcatgtgaaggtgaggcggttgttatggaatatatattggttgtttatgaagaagct |
205 |
Q |
| |
|
||||||| ||||||| |||||||||||||||| || ||| |||| |||||| ||| ||| ||| |||| || |||| |||| | ||||||||||||| |
|
|
| T |
4263 |
ttctcaccttctctttgcagacgattgttttcttttctttagagcttgtgaacgtgcggctgtttgtatgaaaaatattttggctacttatgaagaagct |
4164 |
T |
|
| Q |
206 |
tcgaggcaagctattaa |
222 |
Q |
| |
|
||| ||||||| ||||| |
|
|
| T |
4163 |
tcggggcaagccattaa |
4147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 165
Target Start/End: Complemental strand, 27454645 - 27454488
Alignment:
| Q |
8 |
ttcattatttgtgttgaaggtttatccttccttgttcacgaagttgatcgtcgaaatgatattagatgtatcatgatttgcacgggtgcacccgttactt |
107 |
Q |
| |
|
||||| ||| ||||||||||| | |||| |||| || |||||||| ||||| ||||| |||| | || ||||| ||||| | |||||| |||| || |
|
|
| T |
27454645 |
ttcatcattcgtgttgaaggtctttcctcccttattagtgaagttgaacgtcgtaatgacattaaagatactatgatatgcacagatgcaccagttattt |
27454546 |
T |
|
| Q |
108 |
ctcacattctcttcacagacgattgttttctattttttggagcatgtgaaggtgaggc |
165 |
Q |
| |
|
|||| |||||||| ||||||||||||||| || ||| |||| |||||| ||||||| |
|
|
| T |
27454545 |
ctcatcttctcttcgtagacgattgttttcttttctttagagcttgtgaacgtgaggc |
27454488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 222
Target Start/End: Original strand, 32955514 - 32955630
Alignment:
| Q |
106 |
ttctcacattctcttcacagacgattgttttctattttttggagcatgtgaaggtgaggcggttgttatggaatatatattggttgtttatgaagaagct |
205 |
Q |
| |
|
||||||| ||||||| |||||||||||||||| || ||| |||| ||||| ||||||| ||| |||| || |||| ||| | ||||||||||||| |
|
|
| T |
32955514 |
ttctcaccttctctttgcagacgattgttttctcttctttagagcctgtgagagtgaggctgtttgtatgaaaaatattttgactacttatgaagaagct |
32955613 |
T |
|
| Q |
206 |
tcgaggcaagctattaa |
222 |
Q |
| |
|
||||| ||||| ||||| |
|
|
| T |
32955614 |
tcgagtcaagccattaa |
32955630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 138
Target Start/End: Original strand, 21687795 - 21687925
Alignment:
| Q |
8 |
ttcattatttgtgttgaaggtttatccttccttgttcacgaagttgatcgtcgaaatgatattagatgtatcatgatttgcacgggtgcacccgttactt |
107 |
Q |
| |
|
||||| || |||||||||||| | || |||||| |||| |||| ||| ||||| |||||||| || ||| ||||| ||||| | |||||| ||| || |
|
|
| T |
21687795 |
ttcatcatctgtgttgaaggtctttctttccttattcatgaagctgaacgtcgtaatgatatccgaggtactatgatatgcacagatgcaccaattattt |
21687894 |
T |
|
| Q |
108 |
ctcacattctcttcacagacgattgttttct |
138 |
Q |
| |
|
||||||||||||| |||| ||||| ||||| |
|
|
| T |
21687895 |
ctcacattctctttgcagatgattgctttct |
21687925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 164
Target Start/End: Original strand, 214441 - 214597
Alignment:
| Q |
8 |
ttcattatttgtgttgaaggtttatccttccttgttcacgaagttgatcgtcgaaatgatattagatgtatcatgatttgcacgggtgcacccgttactt |
107 |
Q |
| |
|
||||| ||||||| ||||||||| |||| |||| ||| |||| ||| ||||| ||||| |||||| || ||||| ||||| ||||||||||| || |
|
|
| T |
214441 |
ttcatcatttgtgctgaaggtttttcctcccttattcgtgaagctgaacgtcgtaatgacattagagttactatgatatgcacatatgcacccgttattt |
214540 |
T |
|
| Q |
108 |
ctcacattctcttcacagacgattgttttctattttttggagcatgtgaaggtgagg |
164 |
Q |
| |
|
|||| ||||||| |||||||| ||||| || ||| |||| |||||| |||||| |
|
|
| T |
214541 |
ctcatcttctctttgtagacgatttctttcttttctttagagcttgtgaacgtgagg |
214597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 138
Target Start/End: Original strand, 10998098 - 10998142
Alignment:
| Q |
94 |
tgcacccgttacttctcacattctcttcacagacgattgttttct |
138 |
Q |
| |
|
|||||| |||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
10998098 |
tgcaccagttatttctcacattctctttgcagacgattgttttct |
10998142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University