View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5584_high_36 (Length: 247)
Name: NF5584_high_36
Description: NF5584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5584_high_36 |
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Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 24788871 - 24789100
Alignment:
| Q |
1 |
cccagatgctggtacatcatgggagtctggagtaaggagaagcaccaggttcaggacaaagcctttggaatattggaaaggagaaagaatggtgtatggc |
100 |
Q |
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| T |
24788871 |
cccagatgctggtacatcatgggagtctggagtaaggagaagcaccaggttcaggacaaagcctttggaatattggaaaggagaaagaatggtgtatggc |
24788970 |
T |
|
| Q |
101 |
cgtgtacacgagagtgagtacaatcatagtacttcgttatatttagagaattggatttggcctaatcctaccatgtgtaaaatgtagataacaaatcttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24788971 |
cgtgtacacgagagtgagtacaatcatagtacttcgttatatttagagaattggatttggcctaatcctaccatgtgtaaaatgtagataacaaatcttt |
24789070 |
T |
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| Q |
201 |
tgtttgtgcaggtttgagtactgtcattgg |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
24789071 |
tgtttgtgcaggtttgagtactgtcattgg |
24789100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 2 - 144
Target Start/End: Complemental strand, 24300410 - 24300268
Alignment:
| Q |
2 |
ccagatgctggtacatcatgggagtctggagtaaggagaagcaccaggttcaggacaaagcctttggaatattggaaaggagaaagaatggtgtatggcc |
101 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
24300410 |
ccagatgctggtacatcatgggagtctggagtaaggagaagcaaaaggttcaggacaaggcctttggaatattggaaaggggaaagaatggtgtatggcc |
24300311 |
T |
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| Q |
102 |
gtgtacacgagagtgagtacaatcatagtacttcgttatattt |
144 |
Q |
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| T |
24300310 |
gtgtacatgagagtgagtacaatcgtagtattttgttatattt |
24300268 |
T |
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