View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5584_high_41 (Length: 241)
Name: NF5584_high_41
Description: NF5584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5584_high_41 |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 3679569 - 3679789
Alignment:
| Q |
1 |
caagttatagataagtgtttctcagaactttaacttctaaaagtgttcggcactagtcaaatcatattaaacttgagccaacaattggattgaaggagat |
100 |
Q |
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| T |
3679569 |
caagtcatagataagtgtttctcagaactttaacttctaaaagtgttctgcactagtcaaatcatattaaacttgagccaacaattggattgaaggagat |
3679668 |
T |
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| Q |
101 |
aatttaagtaaacagtaattttgttataagctttatgccaagaatcatgttataacagatagcagaatgaaggtataaatcaacaagtcaaatgaaggaa |
200 |
Q |
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| T |
3679669 |
aatttaagtaaacagtaattttgttat-agctttatgccaagaatcatgttataacagatagcagaatgaagttataaatcaacaagtcaaatgaaggaa |
3679767 |
T |
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| Q |
201 |
cttttgaagatattgaagtcca |
222 |
Q |
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| T |
3679768 |
cttttgaagatattgaagtcca |
3679789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 3703649 - 3703824
Alignment:
| Q |
1 |
caagttatagataagtgtttctcagaactttaacttctaaaagtgttcggcactagtcaaatcatattaaacttgagccaa---caattggattgaagga |
97 |
Q |
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| T |
3703649 |
caagtcatagataagtatttctcagaactttaacttctaagagtattctacaatagtcgaatcatattaaacttgagccaataacaattggattgaagga |
3703748 |
T |
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| Q |
98 |
gataatttaagtaaacagtaattttgttataagctttatgccaagaatcatg-ttataacagatagcagaatgaag |
172 |
Q |
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| T |
3703749 |
gataatttaagtaaacggtaattttgttataagctttatgccaaaaatcatgtttataacagatagcagaatgaag |
3703824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 174 - 218
Target Start/End: Original strand, 3676074 - 3676118
Alignment:
| Q |
174 |
tataaatcaacaagtcaaatgaaggaacttttgaagatattgaag |
218 |
Q |
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| T |
3676074 |
tataaatcaacaagtcaaatgaaggaacttatgaagatattgaag |
3676118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 213
Target Start/End: Original strand, 3695287 - 3695326
Alignment:
| Q |
174 |
tataaatcaacaagtcaaatgaaggaacttttgaagatat |
213 |
Q |
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| T |
3695287 |
tataaatcaacaagtcaaatgaaggaacttatgaagatat |
3695326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 105
Target Start/End: Original strand, 36484419 - 36484499
Alignment:
| Q |
25 |
gaactttaacttctaaaagtgttcggcactagtcaaatcatattaaacttgagccaacaattggattgaaggagataattt |
105 |
Q |
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| T |
36484419 |
gaactttaacttctaagagtagtctgctctagttcaagcatattaaacctaagccaacaaatggaatgaaggaaataattt |
36484499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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